MmuEX0041112 @ mm9
Exon Skipping
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3187589-3191961:+
Coord C1 exon
chr17:3187589-3187745
Coord A exon
chr17:3190147-3190280
Coord C2 exon
chr17:3191817-3191961
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATTTCAAATATTTTGCTTAGAAT
3' ss Score
4.21
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATTGCCTGGGCTTTGAACAAAGGTGTAAAGACAGAATACAAACAGTTCTGGGATGTGGATCTTGGCGTCACATATATACCCTGGGAAAAAGTGAAAGTAGATGACTTGGATGGCTTTGCAGAGGGCGGCATGATTGATCAGGAGACTGTAAATGCTG
Seq A exon
AATGGGAAACTGTGAAAGCCTCAGAACCTGTTAAAGAGCCAGTGCAGACTGCACAGAGTCCAGCTCCAGTTGAGAAGGAGTCAGTGGTCACCACACAGGCAGAGGTTTTCCCTCCTCCTGTCGCCATGCTGCAG
Seq C2 exon
ATTCCTGTAGCACCAGCTGTTCCTGCAGTTAGCTTAGTTCCTCCAGCGTTTCCTGTGTCGATGCCTGTCCCCCCTCCTGGATTCAACCCGATCCCTCCACCTCCTTTTCTACGAGCAAGTTTTAACCCTTCACAACCACCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201-'24-29,'24-28,26-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.635 C2=0.490
Domain overlap (PFAM):
C1:
PF120393=DUF3525=PU(42.7=60.4)
A:
PF120393=DUF3525=PD(56.0=93.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGATCTTGGCGTCACA
R:
AGGAGGTGGTTGTGAAGGGTT
Band lengths:
250-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: