DreEX0065163 @ danRer10
Exon Skipping
Gene
ENSDARG00000000189 | sema6e
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E [Source:ZFIN;Acc:ZDB-GENE-040724-119]
Coordinates
chr16:30284254-30296942:+
Coord C1 exon
chr16:30284254-30284427
Coord A exon
chr16:30291396-30291533
Coord C2 exon
chr16:30296865-30296942
Length
138 bp
Sequences
Splice sites
3' ss Seq
TAACATACTTTTCTCCTCAGATG
3' ss Score
9.26
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTTCAAGCTGACCCAGATTGCAGTGGACACGGCAGCTGGCCCATATAAGAACTACACTGTCGTGTTTCTGGGGTCAGAAAATGGACATGTCCTGAAGGTTTTAGCTAGCATGCATCCAAACTCCTCGTACAGCACTCAGGTTTTGGAGGACATCGATGTTTACAACCCTAACAA
Seq A exon
ATGTAATGTGCGTGGGGAGGACCGGAGGATTCTGGGATTGGAGCTGGATAAAGACCATCATGCCCTGTTTGTGGCCTTTACAGGTTGCGTAATCCGTGTTCCACTCAGTCGCTGTTCGGATTATGGAATCTGCAGAAA
Seq C2 exon
GAGCTGCCTGTCCTCACGAGACCCCTATTGCATCTGGCTGAGCGCAGGGAACTGTGCCACGGTGGCGCCGGGATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000189-'13-18,'13-17,14-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(13.8=100)
A:
PF0140314=Sema=PD(1.2=10.6),PF0143720=PSI=PU(13.8=19.1)
C2:
PF0143720=PSI=FE(40.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGACCCAGATTGCAGTG
R:
CACCGTGGCACAGTTCCC
Band lengths:
234-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]