DreEX0073079 @ danRer10
Exon Skipping
Gene
ENSDARG00000044808 | slc4a4b
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4b [Source:ZFIN;Acc:ZDB-GENE-091030-1]
Coordinates
chr21:5992205-5998341:+
Coord C1 exon
chr21:5992205-5992366
Coord A exon
chr21:5992483-5992576
Coord C2 exon
chr21:5998271-5998341
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTCCACACCTGCGTTCACAGTCG
3' ss Score
5.09
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
ATCCTCGCACTGGTGGCTGTGAGAAAGGCCATGGATTATGTGTTCTCGCAGCACGATCTCAGTTACCTGGATGACGTCATGCCGGAGAAAGACAAGAAGAAGAAGGAGGACGAGAAGAAGAAGAAGAAGAAGAAAGGCAGCATCGACAGCGACATGAATGAT
Seq A exon
TCGGATTTTCCAGCCATCGAGACCATTCCCAGTATAAAGATCTCGATGGAGGACATGGAGCAGGACGCAGTGCTGAGGGAGAAACCCTCAGACC
Seq C2 exon
GAGATAAGCCCATGTCCTTCCTCACTCCCTACTGATGCAAAGCACTTTTTCCCTTCCAGGACTGTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044808_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.380 A=0.250 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGTGGCTGTGAGAAAGG
R:
AGTGAGGAAGGACATGGGCTT
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]