DreEX0074122 @ danRer10
Exon Skipping
Gene
ENSDARG00000044433 | sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-100913-1]
Coordinates
chr6:27493719-27500359:+
Coord C1 exon
chr6:27493719-27493835
Coord A exon
chr6:27496150-27496425
Coord C2 exon
chr6:27500176-27500359
Length
276 bp
Sequences
Splice sites
3' ss Seq
AATACTTTAACTGTTCTCAGATC
3' ss Score
6.95
5' ss Seq
CTAGTAAGA
5' ss Score
5.2
Exon sequences
Seq C1 exon
TGGAGAACCCCTGTGTACTGCAGCCATGTGGGAACCGAGGTGTCTGTCGGAGTGATAGGAGGGGGAACTACAGCTGTGCCTGCAGGGTGGGCCACACAGGGAGAGACTGTGAGAGAG
Seq A exon
ATCTGTTGCCTCCATCTGGCCTAAATGTGTTGCGGGTAGAAGAAAATGAAGTGGAGCTACGCTGGGATCAGTCAGATGTCACTCAGAATTTGATCAGTGGCTTTGCTGTGGCCTTTGCTCCTGTTGGCCGTGTACCAAGAAAGACAGACTTCCTGGAGAAAAAGCATTCCACCTATGTGTTGCAGGGTCTGAACCCCGGACAGCTTTACAACATCTCGACCTACTCCGTCAACAGCATTGACAAAAGCCAGCCAGCTTTCGCTCTTATCCGGACTA
Seq C2 exon
GGCCTCGTCAGGTGGATCAGCTGGAGGTAGTGAACGTGTCGTCCTCTCAGGTTTGGCTGCGGTGGTTGGTGCATGTTGGACGTCATGCTGCGATCAGTCAGGTTCGAGTGTCTCTGGTGCCAGCTGATGGTAGTGGATCTCGCACGGCCGTTCTCAACAGCAGCGTCACAGATTACACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044433-'21-26,'21-25,22-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=80.0)
A:
PF0004116=fn3=WD(100=90.3)
C2:
PF0004116=fn3=PU(72.8=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACCCCTGTGTACTGCAG
R:
GGTGTAATCTGTGACGCTGCT
Band lengths:
294-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]