GgaEX0008548 @ galGal3
Exon Skipping
Gene
ENSGALG00000006039 | SNED1
Description
NA
Coordinates
chr9:5945032-5949920:+
Coord C1 exon
chr9:5945032-5945145
Coord A exon
chr9:5945579-5945875
Coord C2 exon
chr9:5949737-5949920
Length
297 bp
Sequences
Splice sites
3' ss Seq
CTTTTGCCCACACCCTGAAGAAT
3' ss Score
3.21
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
CCAGTGACCCGTGCTTCTCCAGCCCATGTGGGAGCCGAGGCTACTGCCTGCCCAGCAATGGCACCCACAGCTGCACCTGCAAAGTGAGCTACACAGGCAAGAGCTGCGAAAAAG
Seq A exon
AATTGCTGCCACCAACCTCATTAAAGGTGGAAAGGGTGGAGGACACTGGTGTGTTGATTTCTTGGCACCCTCCTGAGGACGCAGCCGCCAGGCAACTCATTGACGGCTACGCCGTGACGTACGTATCCTTCGACGGCTCTTACCGCAGGACAGATTTTGTGGACCGAAGTCGTTCTGCCCACCAATTGCGGGCACTAGCCTCCGGCAGAGCCTACAATATTTCTGTCTTTTCAGTCAAACGCAACGTGAACAACAAGAATGATATCAGCAGGCCTGTCATGCTCACCACGCGCACTA
Seq C2 exon
GACCGCGTCCGGTGGAAGGCTTTGAGATCACGAACGTGACGGCCAGCACCATCACGGTGCAATGGGCTCTCCACCGGCTCAAACACTCCACCGTCAGTAGGGTGCGTGTCTCCATCCGCCAGCCTGGGGACCTGGAAGACCGCACGGTGGAGCTGAACAGCAGCGTGGCCAAGTACACCTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039-'28-25,'28-23,29-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.120 C2=0.113
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0004116=fn3=WD(100=84.0)
C2:
PF0004116=fn3=PU(69.8=96.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACCCGTGCTTCTCCAG
R:
GGAAGGTGTACTTGGCCACG
Band lengths:
295-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]