GgaEX0008548 @ galGal4
Exon Skipping
Gene
ENSGALG00000006039 | SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr9:4401209-4402359:+
Coord C1 exon
chr9:4401209-4401322
Coord A exon
chr9:4402063-4402180
Coord C2 exon
chr9:4402297-4402359
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTTTTGCCCACACCCTGAAGAAT
3' ss Score
3.21
5' ss Seq
GACGTACGT
5' ss Score
9.08
Exon sequences
Seq C1 exon
CCAGTGACCCGTGCTTCTCCAGCCCATGTGGGAGCCGAGGCTACTGCCTGCCCAGCAATGGCACCCACAGCTGCACCTGCAAAGTGAGCTACACAGGCAAGAGCTGCGAAAAAG
Seq A exon
AATTGCTGCCACCAACCTCATTAAAGGTGGAAAGGGTGGAGGACACTGGTGTGTTGATTTCTTGGCACCCTCCTGAGGACGCAGCCGCCAGGCAACTCATTGACGGCTACGCCGTGAC
Seq C2 exon
TCAAACGCAACGTGAACAACAAGAATGATATCAGCAGGCCTGTCATGCTCACCACGCGCACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.710
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0004116=fn3=PU(80.4=92.5)
C2:
PF0004116=fn3=PD(17.4=80.0)
Main Inclusion Isoform:
ENSGALT00000009725fB926
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACCCGTGCTTCTCCAG
R:
GCGTGGTGAGCATGACAGG
Band lengths:
170-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]