BtaEX6019568 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014132 | SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr3:120786789-120788989:+
Coord C1 exon
chr3:120786789-120786902
Coord A exon
chr3:120787087-120787383
Coord C2 exon
chr3:120788806-120788989
Length
297 bp
Sequences
Splice sites
3' ss Seq
TCTTGACCGAAACCCTGAAGAGC
3' ss Score
-1.74
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TGAGTGACCCCTGCTTCTCCAGCCCCTGTGGAGGCCGCGGCTACTGCCTGGCCAGCAACGGGTCCCACAGCTGCACCTGTAAAGTGGGCTACACCGGCAGGGACTGTGACAAAG
Seq A exon
AGCTCTTCCCACCAACGGCCCTCAAGGTGGAGCAAGTGGAAGAGAGTGGGGTCTCCATCTCCTGGCGCCCCCCCGAAGGCCCAGCGGCCAGGCAGCTGCTGGATGGCTATGCCGTCACCTACGTGTCCTCGGACGGCTCCTACCGCCGCACAGACTTCGTGGACCGGGGCCGCTCCGCGCACCAGCTCCGGGCCCTGGCACCCGGCAGGGCCTACAACGTCTCTGTCTTCTCGGTCAAGCGCAACGCCAACAACAAGAACGACATCAGCAGGCCCGTGGTGCTGCTTGCCCGCACGC
Seq C2 exon
GACCCCGCCCCATCGAGGGCCTTGAGGTTGCCAACGTGACAGCCAGCGCCATTTCGGTGCGGTGGGCTCTGCACAGGATCCGCCACGCCACCGTCAGCAGCGTCCGCCTGTCCATCCGCCACCCTGAGGCCCAGGAGGAGCAGTCCACTGACGTGGACAGGAGTGTGGACAGGTTCACGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014132-'22-29,'22-27,23-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.070 C2=0.242
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0004116=fn3=WD(100=83.0)
C2:
PF0004116=fn3=PU(69.8=96.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGACCCCTGCTTCTCCAG
R:
TGAACGTGAACCTGTCCACAC
Band lengths:
296-593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]