GgaEX1066369 @ galGal4
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr9:4401209-4403681:+
Coord C1 exon
chr9:4401209-4401322
Coord A exon
chr9:4402297-4402359
Coord C2 exon
chr9:4403498-4403681
Length
63 bp
Sequences
Splice sites
3' ss Seq
CAATATTTCTGTCTTTTCAGTCA
3' ss Score
7.18
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
CCAGTGACCCGTGCTTCTCCAGCCCATGTGGGAGCCGAGGCTACTGCCTGCCCAGCAATGGCACCCACAGCTGCACCTGCAAAGTGAGCTACACAGGCAAGAGCTGCGAAAAAG
Seq A exon
TCAAACGCAACGTGAACAACAAGAATGATATCAGCAGGCCTGTCATGCTCACCACGCGCACTA
Seq C2 exon
GACCGCGTCCGGTGGAAGGCTTTGAGATCACGAACGTGACGGCCAGCACCATCACGGTGCAATGGGCTCTCCACCGGCTCAAACACTCCACCGTCAGTAGGGTGCGTGTCTCCATCCGCCAGCCTGGGGACCTGGAAGACCGCACGGTGGAGCTGAACAGCAGCGTGGCCAAGTACACCTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.710 C2=0.290
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTGCAAAGTGAGCTACA
R:
CCCTACTGACGGTGGAGTGTT
Band lengths:
144-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]