MmuEX6026471 @ mm10
Exon Skipping
Gene
ENSMUSG00000047793 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:93282269-93283385:+
Coord C1 exon
chr1:93282269-93282382
Coord A exon
chr1:93282692-93282988
Coord C2 exon
chr1:93283202-93283385
Length
297 bp
Sequences
Splice sites
3' ss Seq
TGTTTGGTGCAACCCTGAAGAGC
3' ss Score
-0.46
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TGAGTGACCCCTGCTTCTCTAGCCCCTGTGGGAGCCGCGGCTACTGCTTGGCCAGCAACGGGTCCCACAGCTGTACCTGCAAAGTGGGCTACACAGGCAAGGACTGCACCAAAG
Seq A exon
AGCTCCTCCCACCAACAGCCCTCAGGGTAGAAAGGGTGGAGGAGAGTGGGGTCTCCATCTCCTGGAGTCCACCCGAGGGCACCACGGCCAGGCAGGTGCTGGATGGCTATGCAGTCACCTATGCCTCCTCGGATGGATCGTCCCGGCGCACAGACTTTGTGGACCGGAGCCGCTCCTCTCACCAGCTTCGGGCCCTAGCAGCCGGCCGCGCCTACAATATCTCCGTTTTCTCAGTCAAGAGAAACACAAACAACAAAAATGACATCAGCAGGCCTGCAGCACTGCTCACCCGCACCC
Seq C2 exon
GACCCCGCCCTATAGAAGACTTTGAGGTCACCAACATTTCAGCCAATGCCATCTCAGTGCAGTGGGCTCTTCACAGGATCCAGCACGCCACTGTCAGCAGGGTCCGGGTGTCCATCCTCTACCCCGAGGCCTCTGCGGTCCAGTCCACTGAGGTGGACAGGAGTGTGGACCGCCTCACATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047793-'37-42,'37-41,39-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.221 C2=0.016
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0004116=fn3=WD(100=85.0)
C2:
PF0004116=fn3=PU(71.4=96.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGACCCCTGCTTCTCTA
R:
CAAATGTGAGGCGGTCCACA
Band lengths:
297-594
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types