DreEX0083404 @ danRer10
Exon Skipping
Gene
ENSDARG00000092722 | unc5da
Description
unc-5 homolog Da (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-080908-2]
Coordinates
chr21:16250042-16260064:-
Coord C1 exon
chr21:16259884-16260064
Coord A exon
chr21:16252454-16252621
Coord C2 exon
chr21:16250042-16250206
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCTCTCTTTATCAGTGA
3' ss Score
10.41
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
GTGGAGTGGCTGAAGAATGAAGAGCTGGTGCATTCTCTTGAAGACATCAATATTGACACTCGAGCCGACCACAACTTGATCATCAATGAAGCAAGGCTTTCAGACTCTGGAAACTACACCTGTCTGGCCAGCAACATTGTTGCTAGGAGACGTAGTGCCACAGCTATGGTCATTGTCTTTG
Seq A exon
TGAATGGCGGTTGGTCATCCTGGACGGACTGGTCAGAGTGTAATGTCCGCTGTGGGAGAGGAGTTCAGAAGCGGACACGGACCTGCACTAACCCCGCTCCACTTAATGGAGGGGCTTTCTGTGAGGGAATGTCAGTTCAGAAGAGCACCTGCACATCTCCCTGCCCAG
Seq C2 exon
TGGACGGTGGCTGGTCTGAGTGGACTATGTGGTCTGAATGTACTTCTGAATGTGAAAGGCAGCGCACCAGAGAGTGTACAGACCCGGAGCCAAAACATGGAGGAAGACTGTGCGATGGAGCCGCTCTAGACACAGACAACTGCACTGGAGACCTCTGCATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000092722_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.090
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(64.8=96.7)
A:
PF0009014=TSP_1=WD(100=91.1)
C2:
PF0009014=TSP_1=WD(100=87.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGACACTCGAGCCGACCA
R:
CGCACAGTCTTCCTCCATGTT
Band lengths:
245-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]