DreEX6014164 @ danRer10
Exon Skipping
Gene
ENSDARG00000009281 | dnm1b
Description
dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
Coordinates
chr5:62987536-62999526:+
Coord C1 exon
chr5:62987536-62987837
Coord A exon
chr5:62999051-62999124
Coord C2 exon
chr5:62999377-62999526
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTGTAACTTTTTCTTTTCAGGGA
3' ss Score
10.59
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
Exon sequences
Seq C1 exon
TGGAAAATTGAATCAAACGCTGTAAGGGACAGCTTTTAGATATTAAGGGTCCTGCCAGACCCAGTGAAGACTCCATATAGGGTCGAATACATCCGTTTTTTTCATTCACCGTGAAACAGAGCCTATTATTTACTCCTCAAGATGGGCAATCGGGGAATGGAGGACTTGATTCCTCTGGTAAACCGAATGCAGGATGCCTTCTCAGCCATCGGACAAAATGCCAACCTGGACCTGCCTCAAATCGCGGTGGTGGGCGGTCAGAGTGCTGGGAAAAGCTCGGTTTTGGAGAACTTCGTCGGGAA
Seq A exon
GGATTTTCTGCCTCGTGGATCTGGTATTGTCACTCGGCGCCCCCTAGTGCTCCAGCTGATCAACTGCCCTACTG
Seq C2 exon
AATATGCTGAGTTTTTACATTGCAAGGGGAAGAAGTTTACAGATTTTGATGAGGTCCGCCAGGAGATTGAGGCGGAGACAGATCGCATCACCGGCCAAAACAAAGGCATTTCGCCAGTCCCTATCAATCTGCGTGTCTATTCACCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009281-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.176
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=37.0)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGGAAAAGCTCGGTTTT
R:
GCAGATTGATAGGGACTGGCG
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]