DreEX6021247 @ danRer10
Exon Skipping
Gene
ENSDARG00000088515 | st6gal2b
Description
ST6 beta-galactosamide alpha-2,6-sialyltranferase 2b [Source:ZFIN;Acc:ZDB-GENE-120426-2]
Coordinates
chr6:15332653-15343995:-
Coord C1 exon
chr6:15343234-15343995
Coord A exon
chr6:15332868-15332965
Coord C2 exon
chr6:15332653-15332754
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTTGTTATGATAGATT
3' ss Score
6.22
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGGTGTGTTTGCAGAAAGAAGAGGTCCTTATCAACGCAGACAAGTGTTTTTACCTCCTCATGCTAAAGAATATTTTTATTTTAGGAAATTTGATCGTCGTGGGCTTGGCGTAAAGAAGTCCAAGATAATTCCACCTGAAGATAATGATAGAGATGACTATTTTTCCAATCCCTGGTCGGTGGTCCGGGGTTTGTGGAAGGGGCATGTGTCCTCCAGGATGCTAAGTGCAAAACTGCAGCGAGCCATGAAGGACCATGTTCACACTAATAAGCACAGAGTTCTATACAAAGGCCAGCGTAAGCTGAACAAAAGCAAGCAGGAGCTGTTGTGTCAGATGAAAGAGCAAGCCCAGATCAGGACTCTGAATGGCACTGAGCAGCCTTTTGCCGATCTGGGATTTAAACAGCTGGTTTCTCCTCCACTGCAGCAGAAGTACAGGACGTGTGCTGTGGTGGCGTCAGCAGGGGCAATACTAAACTCATCACTTGGTCATGAAATTG
Seq A exon
ATTCCCACGATGCAGTGCTGCGTTTCAATGCTGCTCCCTCTGAGGGCTATGAGAGAGACGTGGGCAGCAAGACAACCATCCGGATCATGAACTCTCAG
Seq C2 exon
ATTCTAGCAAACCCAAAATACAGATTCGGCAGCAGTTTGCTCTATAAGAACATCACCCTGGTAGCCTGGGACCCAGCGCCTTATAACATTGACCTGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088515-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF099554=DUF2189=WD(100=22.7),PF0077713=Glyco_transf_29=PU(30.4=34.0)
A:
PF0077713=Glyco_transf_29=FE(11.6=100)
C2:
PF0077713=Glyco_transf_29=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCAGAAGTACAGGACG
R:
ATGTTATAAGGCGCTGGGTCC
Band lengths:
168-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]