DreEX6025920 @ danRer10
Exon Skipping
Gene
ENSDARG00000075812 | kcnt2
Description
potassium channel, subfamily T, member 2 [Source:ZFIN;Acc:ZDB-GENE-130530-783]
Coordinates
chr2:12247508-12252683:-
Coord C1 exon
chr2:12252549-12252683
Coord A exon
chr2:12247708-12247819
Coord C2 exon
chr2:12247508-12247609
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCTTTGTGATTGCAGGTT
3' ss Score
7.94
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CCTGGATGACCTGTTGCGTTGTGGCGTTTCTTTTGCTGCCAGCATGGTGGTTGTGGATAAGGAAAGCACCATGACTGCTAAGGAGGACTACATGGCGGATGCAAAAACCATAGTTAATGTTCAGACTCTGTTCAG
Seq A exon
GTTGTTCTCTGGTCTGAACATCATCACTGAGTTAACTCACTCTGCTAACATGAGATTCATGCAGTTCAGCACAAAGGACTGTCATTCCCTGGCATTCTCCAAACTAGCAAAG
Seq C2 exon
AAAGAAAGAGAAAAAGGCTCAAACCTGTCCTTCATATTTCACCTTCCGTTTGCTGCTGGTAGGGTTTTCAGCATCAGCATGCTAGACACACTCCTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075812-'22-22,'22-21,23-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATGACCTGTTGCGTTGT
R:
TGGTAGAGGAGTGTGTCTAGCA
Band lengths:
235-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]