DreEX6027582 @ danRer10
Exon Skipping
Gene
ENSDARG00000002127 | stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:ZFIN;Acc:ZDB-GENE-031118-123]
Coordinates
chr2:31459527-31459988:+
Coord C1 exon
chr2:31459527-31459611
Coord A exon
chr2:31459695-31459770
Coord C2 exon
chr2:31459893-31459988
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTATTTGTTGTCTTCTGAAGGCC
3' ss Score
8.79
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
AAAAAGCAACAAGTGAGATGAACACAGCTGAGGACTGGGGCCTCATTCTGGACATTTGTGACAAGATCGGACAGTCTCGCACTGG
Seq A exon
GCCTAAAGAATGCCTGCGATCTATAATGAGGAGAGTGAATCACAAGGATCCCCATGTTGCCATGCAAGCGTTGACG
Seq C2 exon
CTACTCGGTGCATGTGTGTCAAACTGTGGAAAGATATTCCATTTAGAGGTCTGCTCCAGGGAATTTGCTAGTGAAGTTAGCAATGTGCTAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002127-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(20.6=100),PF136461=HEAT_2=FE(25.7=100)
A:
PF0079014=VHS=FE(18.4=100),PF136461=HEAT_2=FE(22.9=100)
C2:
PF0079014=VHS=FE(22.8=100),PF136461=HEAT_2=FE(28.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAAGTGAGATGAACACAGC
R:
GCACATTGCTAACTTCACTAGC
Band lengths:
168-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]