HsaEX0062217 @ hg38
Exon Skipping
Gene
ENSG00000136738 | STAM
Description
signal transducing adaptor molecule [Source:HGNC Symbol;Acc:HGNC:11357]
Coordinates
chr10:17660464-17688173:+
Coord C1 exon
chr10:17660464-17660548
Coord A exon
chr10:17684675-17684750
Coord C2 exon
chr10:17688027-17688173
Length
76 bp
Sequences
Splice sites
3' ss Seq
TACTTTTCTCATTTTTTTAGACC
3' ss Score
9.24
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
AGAAAGCAACCAGCGAGATGAATACTGCTGAGGACTGGGGCCTCATTTTGGATATCTGTGATAAAGTTGGTCAGTCTCGCACTGG
Seq A exon
ACCTAAGGATTGTCTTCGGTCTATTATGAGAAGAGTGAACCACAAAGATCCTCACGTTGCTATGCAGGCTTTGACT
Seq C2 exon
GGTCATCCTAAAGTATGTGAAAAATTAAAGGCTCTTATGGTTGAATGGACAGATGAATTTAAGAATGATCCACAGCTTAGTCTAATATCAGCAATGATTAAGAACCTTAAGGAACAAGGAGTTACGTTCCCAGCTATTGGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136738_MULTIEX1-5/18=2-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.177 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(20.7=100)
A:
PF0079014=VHS=FE(18.5=100)
C2:
PF0079014=VHS=PD(28.9=79.6)
Main Skipping Isoform:
ENST00000377524fB6743
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCCTCATTTTGGATATCTGT
R:
GCTGGGAACGTAACTCCTTGT
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development