MmuEX6099046 @ mm10
Exon Skipping
Gene
ENSMUSG00000026718 | Stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:MGI Symbol;Acc:MGI:1329014]
Coordinates
chr2:14102401-14117535:+
Coord C1 exon
chr2:14102401-14102485
Coord A exon
chr2:14115817-14115892
Coord C2 exon
chr2:14117389-14117535
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTAAATTTCTCATTTTTTAGACC
3' ss Score
9
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGAAAGCAACTAGTGAGTTGAATACTGCTGAGGACTGGGGCCTCATCTTGGATATTTGTGATAAGGTTGGCCAATCTCGCACAGG
Seq A exon
ACCTAAAGATTGTCTTCGTTCCATTATGAGAAGAGTGAACCATAAAGACCCCCATGTTGCTATGCAAGCCTTAACT
Seq C2 exon
GGTCATCCTAAAGTATGTGAAAAATTAAAGGCTCTTATGGTTGAATGGACAGATGAATTTAAGAATGATCCACAGCTTAGTCTGATATCGGCAATGATCAAGAACCTTAAGGAACAAGGTGTAACATTCCCAGCTATTGGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026718_MULTIEX1-2/3=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(21.1=100),PF136461=HEAT_2=FE(22.6=100)
A:
PF0079014=VHS=FE(18.8=100),PF136461=HEAT_2=FE(20.2=100)
C2:
PF0079014=VHS=PD(29.3=79.6),PF136461=HEAT_2=PD(29.0=73.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACTGCTGAGGACTGGGGC
R:
AAGGTTCTTGATCATTGCCGA
Band lengths:
173-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types