RnoEX0086634 @ rn6
Exon Skipping
Gene
ENSRNOG00000060817 | Stam
Description
signal transducing adaptor molecule [Source:RGD Symbol;Acc:1564499]
Coordinates
chr17:81222906-81233940:+
Coord C1 exon
chr17:81222906-81222990
Coord A exon
chr17:81233684-81233759
Coord C2 exon
chr17:81233845-81233940
Length
76 bp
Sequences
Splice sites
3' ss Seq
TAAACTTGTCGTTTTTTAGAGCC
3' ss Score
-9.94
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGAAAGCAACCAGTGAGTTGAATACTGCTGAGGACTGGGGCCTCATCTTGGATATTTGTGATAAGGTTGGCCAATCTCGCACAGG
Seq A exon
GCCTAAAGATTGTCTTCGTTCTATTATGAGAAGAGTGAACCATAAAGACCCCCATGTTGCTATGCAGGCTTTAACT
Seq C2 exon
CTTCTAGGAGCATGTGTATCAAACTGTGGCAAAATTTTTCACTTAGAAGTGTGTTCAAGGGATTTCGCTAGCGAAGTAAGCAATGTGTTAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060817-'5-9,'5-7,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(20.7=100)
A:
PF0079014=VHS=FE(18.5=100)
C2:
PF0079014=VHS=FE(23.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACCAGTGAGTTGAATACTGC
R:
CACATTGCTTACTTCGCTAGCG
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]