MmuEX6099046 @ mm9
Exon Skipping
Gene
ENSMUSG00000026718 | Stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:MGI Symbol;Acc:MGI:1329014]
Coordinates
chr2:14024028-14037700:+
Coord C1 exon
chr2:14024028-14024112
Coord A exon
chr2:14037444-14037519
Coord C2 exon
chr2:14037605-14037700
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTAAATTTCTCATTTTTTAGACC
3' ss Score
9
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGAAAGCAACTAGTGAGTTGAATACTGCTGAGGACTGGGGCCTCATCTTGGATATTTGTGATAAGGTTGGCCAATCTCGCACAGG
Seq A exon
ACCTAAAGATTGTCTTCGTTCCATTATGAGAAGAGTGAACCATAAAGACCCCCATGTTGCTATGCAAGCCTTAACT
Seq C2 exon
CTTCTGGGAGCATGTGTATCAAACTGTGGCAAAATTTTTCACTTAGAAGTATGTTCAAGAGACTTTGCTAGTGAAGTAAGCAATGTATTAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026718-'6-3,'6-2,7-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(20.7=100),PF136461=HEAT_2=FE(25.2=100)
A:
PF0079014=VHS=FE(18.5=100),PF136461=HEAT_2=FE(22.5=100)
C2:
PF0079014=VHS=FE(23.0=100),PF136461=HEAT_2=FE(27.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTAGTGAGTTGAATACTGCTGAGG
R:
AATACATTGCTTACTTCACTAGCAA
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: