GgaEX1055865 @ galGal4
Exon Skipping
Gene
ENSGALG00000008654 | STAM
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:HGNC Symbol;Acc:HGNC:11357]
Coordinates
chr2:19534939-19541550:-
Coord C1 exon
chr2:19541466-19541550
Coord A exon
chr2:19535117-19535192
Coord C2 exon
chr2:19534939-19535034
Length
76 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTTGTCTTGCTTTAGGCC
3' ss Score
9.94
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
AGAAAGCAACCAGTGAGATGAACACTGCAGAGGACTGGGGCCTCATCTTAGACATTTGTGATAAAGTTGGACAGTCACGCACAGG
Seq A exon
GCCTAAGGATTGTCTTCGTTCCATTATGAAGAGAGTGAACCATAAGGATCCCCATGTTGCTATGCAGGCTTTAACA
Seq C2 exon
CTTCTAGGAGCATGTGTATCAAACTGTGGCAAAATCTTTCATTTAGAGGTCTGTTCAAGAGACTTTGCCAGTGAAGTAAGCAATGTGTTGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008654-'0-5,'0-4,2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079014=VHS=PU(18.3=95.7)
A:
PF0079014=VHS=FE(20.8=100)
C2:
PF0079014=VHS=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACCAGTGAGATGAACAC
R:
ACACATTGCTTACTTCACTGGCA
Band lengths:
169-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]