GgaEX1055865 @ galGal3
Exon Skipping
Gene
ENSGALG00000008654 | STAM
Description
NA
Coordinates
chr2:19583104-19589718:-
Coord C1 exon
chr2:19589631-19589718
Coord A exon
chr2:19583282-19583357
Coord C2 exon
chr2:19583104-19583199
Length
76 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTTGTCTTGCTTTAGGCC
3' ss Score
9.94
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
TAGAGAAAGCAACCAGTGAGATGAACACTGCAGAGGACTGGGGCCTCATCTTAGACATTTGTGATAAAGTTGGACAGTCACGCACAGG
Seq A exon
GCCTAAGGATTGTCTTCGTTCCATTATGAAGAGAGTGAACCATAAGGATCCCCATGTTGCTATGCAGGCTTTAACA
Seq C2 exon
CTTCTAGGAGCATGTGTATCAAACTGTGGCAAAATCTTTCATTTAGAGGTCTGTTCAAGAGACTTTGCCAGTGAAGTAAGCAATGTGTTGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008654-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(21.5=100)
A:
PF0079014=VHS=FE(18.5=100)
C2:
PF0079014=VHS=FE(23.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACCAGTGAGATGAACAC
R:
ACACATTGCTTACTTCACTGGCA
Band lengths:
169-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]