DreEX6028668 @ danRer10
Exon Skipping
Gene
ENSDARG00000025513 | dip2cb
Description
DIP2 disco-interacting protein 2 homolog Cb (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070912-589]
Coordinates
chr2:42668162-42670386:-
Coord C1 exon
chr2:42670286-42670386
Coord A exon
chr2:42668370-42668450
Coord C2 exon
chr2:42668162-42668285
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTCTGTGCATTGTAGTTT
3' ss Score
8.79
5' ss Seq
CGGGTAACA
5' ss Score
5.3
Exon sequences
Seq C1 exon
AGGTGGGTCCTGCCTCAGTGATGGTGGGGAATCTTGTCGCGGGGAAACGAATGGCTCAGGCCAGCGGACGAGATTTGAGTCACATGGAGGACAATGAGCAG
Seq A exon
TTTCTCTTTCTGTCGGAGATGCTGCAGTGGAGAGCTCAGACAACACCAGAGCACATACTGTACACGCTCATTAACTCACGG
Seq C2 exon
GGAGCAGTAGGAAGTTCTCTGACTTGTCTACAACTGCACAAGAGAGCAGAGAAAATCGCCACTTTGCTTTATGAAAGAGGACAGTTACGAGACGGAGACCACGTAGCCCTAGTTTATCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025513-'24-29,'24-28,25-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(30.6=70.4)
C2:
PF0050123=AMP-binding=FE(66.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTGGGGAATCTTGTCGC
R:
TGGTCTCCGTCTCGTAACTGT
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]