DreEX6047443 @ danRer10
Exon Skipping
Gene
ENSDARG00000019601 | col12a1b
Description
collagen, type XII, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-120215-116]
Coordinates
chr20:49666077-49667473:-
Coord C1 exon
chr20:49667402-49667473
Coord A exon
chr20:49666230-49666265
Coord C2 exon
chr20:49666077-49666143
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGTGATTTTCATTCCTGCAGGGA
3' ss Score
10.76
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GGACCCCCAGGAGCCCCTGGAATGCCCGGACCTGCTGGAAAGCCTGGAAAGAATGGAGATACAGGTGTTCCG
Seq A exon
GGACTTACCGGGGTTAAAGGAGACAAAGGAGAGAGA
Seq C2 exon
GGAGACATCGCATCTCAGAGCATGATGCGCTCTATTGCCAGACAAGTCTGCGAACAGCTCGTGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019601-'82-84,'82-83,83-84=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(35.9=100)
A:
PF0139113=Collagen=FE(17.2=100)
C2:
PF0139113=Collagen=PD(9.4=26.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAATGCCCGGACCT
R:
GTTCGCAGACTTGTCTGGCAA
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]