DreEX6054502 @ danRer10
Exon Skipping
Gene
ENSDARG00000024167 | kcnh1a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1a [Source:ZFIN;Acc:ZDB-GENE-061226-1]
Coordinates
chr17:25667118-25671376:+
Coord C1 exon
chr17:25667118-25667246
Coord A exon
chr17:25667319-25667437
Coord C2 exon
chr17:25670984-25671376
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTATGTGTTTCTGTGTTCAGGCT
3' ss Score
9.59
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
GAACGCCGGTATGGTTTTTTGTGAAAATAGCCCCTATACGAAACGAACAGGAGAAGGTCGTACTCTTCCTGTGTACGTTTAGTGACATCACAGCATTCAAGCAACCAATAGAAGATGACTCCTCTAAAG
Seq A exon
GCTGGGGGAAGTTTGCGCGTCTGACCAGGGCTTTGACCAGCAGTAGAGGGGTCCTTCAGCAACTGCAGCCCACCGTACATAAAGGAGAGAATGTACATAAACACTCGCGCCTTGCAGAG
Seq C2 exon
GTTCTCCAGCTGGGCTCTGATATTCTGCCCCAGTACAAACAAGAGACACCCAAAACCCCTCCTCACATCATCCTGCACTACTGTGCCTTCAAGACCACCTGGGACTGGGTGATCCTCATCCTCACCTTCTACACAGCCATCATGGTGCCCTACAACGTCTCCTTCAAGACCAAACAGAACAACGTCACCTGGCTAGTGGTGGACAGTATAGTGGATGTGATCTTTCTGGTGGACATTGTGCTGAATTTCCACACGACGTTTGTGGGCCCGGCCGGGGAAGTCATTTCAGACCCCAAACTGATTCGCATGAATTACTTGAAAACATGGTTTGTGATTGACCTGTTGTCCTGTCTGCCTTATGACGTCATCAACGCCTTTGAGAATGTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024167-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.2=70.5)
A:
NO
C2:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(29.5=49.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAACAGGAGAAGGTCGTACT
R:
TGAAGGAGACGTTGTAGGGCA
Band lengths:
253-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]