DreEX6068009 @ danRer10
Exon Skipping
Gene
ENSDARG00000071709 | ppp1r9bb
Description
protein phosphatase 1, regulatory subunit 9Bb [Source:ZFIN;Acc:ZDB-GENE-121214-117]
Coordinates
chr12:9720040-9723987:+
Coord C1 exon
chr12:9720040-9720189
Coord A exon
chr12:9721213-9721266
Coord C2 exon
chr12:9723758-9723987
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGTTTACTATTTTGACACAGTTG
3' ss Score
5.75
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
CCGGGTGATTATGGCACGGATGAAGAGGAAGAAGATGAAATGAGCCCCACATACCCCAGTGCCATAGAGGTGTTCGACCTGGCTGAGAACGAAGACATGCTTTCACCTGTAGAAGTGGACCCTGAGAAGCTTGCCCACAAATATAAAGAA
Seq A exon
TTGCAGATCAAACATGCTGTGACCCAGGCTGAAATCCAACAGCTCAAGAGGAAG
Seq C2 exon
TTAAATCACGCAGAGCAGGATAAGCAGCGCTGGCGTTCTGAGAAAGCTCAGATGGAGCGCAACATGCAGGAGAACCGGGAGCGCATGGAGAAGCTTGAGGGGTATTGGATGGAGGCGCAGAGTTTGTGCCAGGCTGTGGACGAGCACCTGAAAGAAACGCAGGCTCAGTACCAGGCTCTGGAGCGCAAATACAGCAAGGCCAAACGCCTCATCAAAGAGTATCAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071709-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=0.333 C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGAAGCTTGCCCACAAA
R:
GCCTCCATCCAATACCCCTCA
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]