DreEX6069531 @ danRer10

Exon Skipping

Gene

ENSDARG00000010953 | ndel1a

Description

nudE neurodevelopment protein 1-like 1a [Source:ZFIN;Acc:ZDB-GENE-040115-2]

Coordinates

chr12:26380354-26385096:+

Coord C1 exon

chr12:26380354-26380450

Coord A exon

chr12:26384691-26384844

Coord C2 exon

chr12:26384948-26385096

Length

154 bp

Sequences

Splice sites

3' ss Seq

TGATATGTATGTGTGTTCAGTTA

3' ss Score

6.31

5' ss Seq

AAGGTGACA

5' ss Score

5.19

Exon sequences

Seq C1 exon

GTTTATCTGTCATGGATGCAAATATGATACCAAAATTCACCACTAAAGAGGAGGAAATTGACTTCTGGAAGGCTCTTTCACTCAAGTACAAAAAAAG

Seq A exon

TTATAAGGAGGCACAGGAGGAGTTGCTGGAGTTTCAAGAGGGCAGCAGAGAGCTGGAAACCGAGCTGGAGACACAACTGGGCCAAGCGGAGCATCGAATCAGAGACTTGCAGGCAGACAATCAGAGACTGCAGCATGAGCTCGACTCGCTCAAG

Seq C2 exon

GAGAAGCTGGAATATCAGTATGCTCAGAGCTATAAACAGATCTCTGTGCTGGAGGACGACCTCAGCCAGACTCGAGGCATCAAGGAACAGCTGCATAAATATGTCCGAGAGTTAGAACAGGCCAATGACGACCTGGAGAGAGCTAAGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000010953-'3-7,'3-5,5-7=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.079 A=0.365 C2=0.220

Domain overlap (PFAM):

C1:

PF124413=DUF3680=WD(100=72.4),PF079267=TPR_MLP1_2=PU(34.2=93.1),PF102414=KxDL=PU(23.2=65.5)

A:

PF079267=TPR_MLP1_2=FE(64.6=100),PF0003816=Filament=FE(47.2=100),PF102414=KxDL=FE(62.2=100),PF0771610=bZIP_2=PU(88.9=46.2),PF0218313=HALZ=PU(75.0=40.4)

C2:

PF0003816=Filament=PD(31.5=68.0),PF102414=KxDL=PD(12.2=20.0),PF0771610=bZIP_2=PD(3.7=2.0),PF0218313=HALZ=PD(17.9=10.0),PF0076914=ERM=PU(21.6=90.0)

Main Inclusion Isoform:

ENSDARP00000003032