DreEX6070361 @ danRer10
Exon Skipping
Gene
ENSDARG00000060680 | si:ch73-127m5.1
Description
si:ch73-127m5.1 [Source:ZFIN;Acc:ZDB-GENE-130531-25]
Coordinates
chr12:35086994-35090070:+
Coord C1 exon
chr12:35086994-35087135
Coord A exon
chr12:35088141-35088422
Coord C2 exon
chr12:35089948-35090070
Length
282 bp
Sequences
Splice sites
3' ss Seq
TTCATTCCTCTCTCTGGCAGTGG
3' ss Score
8.42
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GGCCTCTGGTTCGTCTGGCAGGTGGTGACAGTAGGAAGGAGGGCCGGGTGGAGGTGTTTCTTAATGGCGAATGGGGCAGCGTATGTGATCACGGCTGGAATGATGTCAATGCTGCCGTCGTCTGCAGACAGCTCGGATTCAA
Seq A exon
TGGGGAATCAAAAGCACGTCCGATGGGATATTTTGGAGCAGGTAAAGGCACCATCCATCTGTCCAATGTGAGATGCACTGGGAAGGAGTCTCTCCTCGGCGAATGTCCTTCTAAAGGACAGGACAGCCATGTTTGTAAGCATGGTCAGGATGCAGGTGTGGTGTGTGATTATGAGCCGGAGCCCGAGGCTGACGTTGCAGTTGTGGGCACACACACCTGCGGGCTCAGAGCCGGAGCCGAAAGACGCAGCAAGAGGATTGTTGGAGGTTACAAATCTCTCAG
Seq C2 exon
GGGTGACTGGCCCTGGCAGGCGTCTCTGTGGCTCAGATCTCAGTCTAAAGGGAACCAGCCTCTGTGTGGAGCAACTCTCATCAACTCCTGCTGGCTGCTCACTGCGGCGCACTGCTTCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060680-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
PF0053013=SRCR=PD(57.1=58.9),PF0008921=Trypsin=PU(3.3=8.4)
C2:
PF0008921=Trypsin=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGTTCGTCTGGCAGGT
R:
GTTTGAAGCAGTGCGCCG
Band lengths:
261-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]