DreEX6086407 @ danRer10
Exon Skipping
Gene
ENSDARG00000074329 | arvcfa
Description
armadillo repeat gene deleted in velocardiofacial syndrome a [Source:ZFIN;Acc:ZDB-GENE-091113-43]
Coordinates
chr10:481399-488429:+
Coord C1 exon
chr10:481399-481516
Coord A exon
chr10:484407-484572
Coord C2 exon
chr10:488358-488429
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTCATGTGTTTTTTTTGCAGTCG
3' ss Score
9.06
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GAACGTGAGTTCAGACGGAGCCGAGGCGCGGCAGAGACTGCGGGAGTGTGACGGACTGGTGGACGCCCTGCTGCACGCGCTTTACTCTGCCGTCGCTAAAAGAGACATAAATAACAAA
Seq A exon
TCGGTGGAGAACTGTGTCTGTATCTTGCGTAATCTCTCCTACCATGTGCACAAAGAGGTTCCCGGAGCTGAGAAATTCCACATCCAGGCGGCCAGTCACAATGCCAAACCAGCAGGACACCACAAGAAGGACAAGCCGGACTGTTTTGGCGGACGGACAACCAAAG
Seq C2 exon
GCAAAAGACACGGAGCTGTAGAGAAGAAGAGCGGCGGTGCTGATCTGCCCAAGAGGAGTCTGCCGATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074329-'5-7,'5-5,6-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.500 C2=0.440
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0051418=Arm=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGTTCAGACGGAGCCGAG
R:
CTCTCATCGGCAGACTCCTCT
Band lengths:
186-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]