DreEX6095545 @ danRer10
Exon Skipping
Gene
ENSDARG00000057169 | abca4a
Description
ATP-binding cassette, sub-family A (ABC1), member 4a [Source:ZFIN;Acc:ZDB-GENE-050517-3]
Coordinates
chr24:28554314-28558077:+
Coord C1 exon
chr24:28554314-28554461
Coord A exon
chr24:28554635-28554758
Coord C2 exon
chr24:28557948-28558077
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATCTGTGTCTACTCTTGCAGGCT
3' ss Score
9.47
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TTGGTCGGTGACACCAATGATGTATCCAATGTCTTATATATTCAACGTGCCCAGCACAGCGTACGTCTCTCTGTCCTGCATCAACCTCTTCATTGGCATCAACAGCAGTGCCATTACCTTTATTTTAGACCTGTTTGACAGTACAGAG
Seq A exon
GCTCTGTATAAGTGTAACCAGGTGCTGAAGAAGGCTTTGCTTGTCTTTCCTCACTTCTGTTTGGGCCGCGGGCTCATTGACATGGCGATGAACCAGGCCGTGATGGACGTGTATGCACGCTTTG
Seq C2 exon
GTGAGGACTTCAGTCTGGATCCATTCAGCTGGGACTTTGTTGGAGAAAATTTGACTTTCATGGCAGTAGAGGGATTTGTGTATTTCATCCTGAACATTTTGATACAGTACCGGTTCTTCCTGGATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057169-'45-46,'45-45,46-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.0=100)
A:
PF126982=ABC2_membrane_3=FE(11.7=100)
C2:
PF126982=ABC2_membrane_3=PD(9.4=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATATTCAACGTGCCCAGCA
R:
AGTGATCCAGGAAGAACCGGT
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]