GgaEX6044187 @ galGal4
Exon Skipping
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12671646-12673933:+
Coord C1 exon
chr8:12671646-12671793
Coord A exon
chr8:12672957-12673080
Coord C2 exon
chr8:12673804-12673933
Length
124 bp
Sequences
Splice sites
3' ss Seq
GTTGCTTCTGTTTCTTATAGACT
3' ss Score
8.11
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGGGCAGCAATTCCCATGATGTACCCTGCTTCTTCTTTCTTCAGTGTTCCTAGCACTGCATACGTTGCATTGTCTTGCATTAATCTCTTCGTGGGGATCAACAGCAGTGCCATTACATTCATCCTGGAGCTATTTGAAAATAACCCG
Seq A exon
ACTTTGCTGAAATTTAATAAAACTTTGAAAAATGTGCTAATTGTCTTCCCACACTTTTGCCTGGGTCGTGGCCTCATTGACTTGGCCATAAACCAAGCTGTGAGTGAAGTATATGCCAGGTTTG
Seq C2 exon
GTGAGGAGCATGTTTCTAATCCTTTTCAGTGGGACTTCATTGGGAAGAACCTGGTTGCCATGGCTGTTCAAGGAGTAGCATTCTTCACTCTGAATCTCCTTATGCAGCACCAATTATTCCCCTCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'45-47,'45-46,46-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.9=100)
A:
PF126982=ABC2_membrane_3=FE(12.5=100)
C2:
PF126982=ABC2_membrane_3=PD(10.1=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGATGTACCCTGCTTCT
R:
AGGGGAATAATTGGTGCTGCA
Band lengths:
258-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]