DreEX6096642 @ danRer10
Exon Skipping
Gene
ENSDARG00000102312 | CABZ01063402.1
Description
NA
Coordinates
chr24:40745080-40748848:+
Coord C1 exon
chr24:40745080-40745221
Coord A exon
chr24:40747530-40747727
Coord C2 exon
chr24:40748684-40748848
Length
198 bp
Sequences
Splice sites
3' ss Seq
GGTGTGTGTGTGCTGCACAGACG
3' ss Score
5.35
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAAATGTCCGGATGGATTTGAATGCTTAAAGACGGGCAGAAACCCGAACTACGGCTACACCAGCTTCGACACCTTCGGATGGGCTTTTCTGTCTCTCTTCAGACTCATGACTCAAGATTACTGGGAAAACCTCTACCATCAC
Seq A exon
ACGCTGCGCTCTGCAGGAAAAGCGTACATGGTGTTTTTCGTGGTGGTGATCTTCCTGGGCTCCTTTTACCTGGTCAATCTGATCCTGGCGGTGGTGGCGATGGCCTACGAGGAGCAGAACCAGGCCACCATCGCTGAAGCTCTGCAGAAAGAGCAGGAGTTCCAGCTCGCCATGGAGCAGCTCAAGAAGGAGCAGCAG
Seq C2 exon
GCGGCTCAGAAAGCACAAGAAACAGAGTCCATCCTGACGGCAGACGTGTCGCCCTTTTCTACACAAGACAAAGCCAAGCTGGAGCGCAGGAAAAGCTCCCGGCCGCTGTCAGAGGGCACAGGAGAAGACAAACCGGCCAAACTGGACCCCATAGAGGGCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102312-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.564
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(18.1=100)
A:
PF0052026=Ion_trans=PD(11.9=47.0),PF119333=DUF3451=PU(13.3=48.5)
C2:
PF119333=DUF3451=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGAAACCCGAACTACG
R:
TTTGGCCGGTTTGTCTTCTCC
Band lengths:
250-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]