DreEX6099780 @ danRer10
Exon Skipping
Gene
ENSDARG00000099446 | slit1b
Description
slit homolog 1b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-4]
Coordinates
chr22:34910001-34912768:-
Coord C1 exon
chr22:34912625-34912768
Coord A exon
chr22:34912377-34912540
Coord C2 exon
chr22:34910001-34910024
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTGGCTTTTTTCGTTTCTAGTCA
3' ss Score
8.6
5' ss Seq
CGGGTAATT
5' ss Score
6.79
Exon sequences
Seq C1 exon
ACTACTAAACGCCAATAAAATCCACTGTGTCCGTGTCAACGTCTTCCAGGACCTGGAGAACTTATCTCTATTGTCCCTCTATGACAATAAGATCCAGACTCTTGCGAAAGGCACATTCGCGCCGCTGAAATCCATCCAGACTCT
Seq A exon
TCATTTGGCCCAGAATCCGTTCGTCTGTGATTGTGGTTTGAAGTGGCTGGCAGATTTTCTGAGGTCAAACCCGATTGAGACCAGCGGCGCGCGGTGCTCCAGTCCTCGACGGCTCGCTAACAAGCGCATCAGTCAGATCAAGAGCAAGAAGTTCCGCTGTTCGG
Seq C2 exon
CCAAGGAGCAGTATTACATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099446-'13-16,'13-14,14-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=14.6),PF127992=LRR_4=PU(59.2=60.4)
A:
PF127992=LRR_4=PD(36.7=32.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGCCAATAAAATCCACTGTGT
R:
CTGGGATGTAATACTGCTCCTTGG
Band lengths:
162-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]