DreEX6099781 @ danRer10
Exon Skipping
Gene
ENSDARG00000099446 | slit1b
Description
slit homolog 1b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-4]
Coordinates
chr22:34908062-34910024:-
Coord C1 exon
chr22:34910001-34910024
Coord A exon
chr22:34909758-34909902
Coord C2 exon
chr22:34908062-34908136
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATGCTGGTTTTCTGTCTCAGGCT
3' ss Score
8.1
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
Exon sequences
Seq C1 exon
CCAAGGAGCAGTATTACATCCCAG
Seq A exon
GCTCAGAGGACACACGAATGAATAAGGACTGCAACAGCAAGCCTGTTTGTCCACCCAAATGCCGCTGTGAAGCTACCGTGGTGGACTGCTCCAATTTGCGGCTGACCAAGTTCCCCGAGCACCTTCCGCTTTCTACAACTGAACT
Seq C2 exon
ACGTCTCAATAACAACGACCTGTCTATCCTGGAGGCAACAGGACTCTTCCGGCCCCTCACACATCTCAAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099446-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0146213=LRRNT=WD(100=57.1),PF138551=LRR_8=PU(4.9=6.1)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGAGCAGTATTACATCCCA
R:
TTTTCTTGAGATGTGTGAGGGGC
Band lengths:
98-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]