DreINT0040903 @ danRer10
Intron Retention
Gene
ENSDARG00000019208 | camsap1a
Description
calmodulin regulated spectrin-associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-060518-4]
Coordinates
chr21:4548106-4554008:-
Coord C1 exon
chr21:4553890-4554008
Coord A exon
chr21:4548790-4553889
Coord C2 exon
chr21:4548106-4548789
Length
5100 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
TCATTCCCATGAATCCACAGGAA
3' ss Score
8.73
Exon sequences
Seq C1 exon
GGCCCAGATTATTCAAAGAGCCGAGTGCAAAGTCCAACAAACCCATCATCCAGAACGCCATCGCTCACTGCTGTCTGGCGGGAAAAGTCAATGAAGCCCAGAAGAACGCTATTCTGGAC
Seq A exon
GTGAGTGCAGTCATAATCACACTTTCCAACAGTCTTCACAATTGTATTGCAAATTAAACCATTAAATAAACTCCACTTTGTTTTTGTTTTTTGCACGTGCTGTAGCGTGATCTACCTGTTTTTTTTTATCTGCACCCTTTGAAAATAAAATAAATCTAAATTCAAGATGAAACATACATGAAAGATACAGTTAAGAAAATTTTAAATTGCATATAAGAGATAAAAATTACAGAGATGCAATGTTTGGTCTGGGGCAATGATGTCATCAAATCATGTCCTTAGAATACTATCCTATATTATTGACCTTATTCTTCGTGTACGAGCGGGTGCAGCCATTTGAATCTTTTTGGCTCGAGACTTCCGGTCTCATTCACTTCCATTCATTATTAGATGTTTGAAACAGCTCGTTGTGCTGCTTGGTGTTGCAAACTAATATTTTCTTATTATATTATTATACTTTTTTATGTATAGTAATGAACACACTTGTTTGTAGAGGAAGTAGTTTGACCGTTTCTCATCTGGAAAGTGCTCAAATTTGACTTTTTAAAAGGTGTAAGAACTCTTTAAAAATAAACAGATTTTTATTGTTTGTAAGTGTGGATGCAAATGTATTTAGTGTTTAAGTTGTGAAGTTAACATGCTTGGTGTAAACAGGCTTGAAAATGCTTGTTTTATAGTGTAAATAACAAACATTTTAGTTTTTGTCTTGTTTCAAGTCCAAATATCTAAAAATTCTTAAATCAAGAAGTATTTTCTAGACAAGCAAAAACGCTGTTTTGTTTTTTAGAAATAATAAGGGGAAACTTAAGGCTGATTTATACTTCTGCGTCAAGCGCGAATGTATGCTACGGCGCAGCCTACGCGTTAACGCATAGCCCTACGCCGTGGCCGTCGGCGTCGCTGACGTGCACCTTTCAAAAAATTTAACTACACATCACAACGACGCGTAGCGCAAGCTCTGTGATTGGTCGGCTTGGTAGCGATGATGAGTCTGGGCGGGACCGAGAGCCGCACGAGCGGCGCAAGCCTGATGGAGCGATTGTTTACAAGTGTGGAGTCCCGTGAAGGAGCTCCGGATGGAAAGTTTTGTTTTGTGTTTACCTCATAGTTAAAGTTGTTGCACGTCCGCCGGTTCCTGCCTCAAACTGAGCGAGTTTGAGCCACTTGTACATTCAGGAAGCGTTTAGAAAAAACTAAACACCAGCGAAGAAACTCGACACAGAGGACCATTTACACCTCACTGCCAACTAGCGTTTTGGAAGTGTTAATGCAGACCGACCGAGACAGCGCGCAGAAGTATAAATGCACAGCTATGGGCGTTGCATGCGCCGTGGGTTTTGCCGGTCACCTGACGCAGAAGTATAAACCAGGCTGTAAGTGAGTTTAACATCAAAACAGGCTAAATAATCGTGTTGTCATGATACTGGAATTTGGTACCAATTGATACAAATTTTTAAAAACGTCCATTTCCCACTCACATTTGAGCGCGTTCTTAAACAGCACTGATTTGGCATTGTGTTCACGTGCTCAACAGAAATCACTGTGACTGGCCGTGGAGATCATCATTTCACCAAACTCACTGCTTTTTACTGAGTGTAAACACAGATACAGGTACACTGGAGCCTTTTAAAGCCGTGATTCATTAGCGGATCGATCGTATGTCAGCTTATATACCAGGGGTGTCCAAACTCAGTCCTGGAGGTCCAGTGTCCTGCAGATTTTAGCTCCAACTTGCCTCAACTCACCTGCAGGGATGTTTTTAGAAAGCCTAGTAAAGCTTGATTAGCTAGCACAGGTGTGTCTGATTGGGTTGGAGCTAAAATGTGCAGAACACTGGACCTCTAGGACCGAGTTTGGGCACCTCTGTTATAGACAAGCTAGCTGATCGGCCTGACTTTAAAATGCTGGCAAATCAGCGCTGTTTAAGAAACATGCTCAACAGTACTCATAATTTCAGTATTGATTGGTTACAGCTTCCAGTATCGTAAAAACACCACAGTGGGGTAAGCAAAATAAACTTACTTTTAAAATTAAAAATAAGAATATTTTACTCCCCATGGCAGATTATTTACCTTATTTAAGGCAAAAACCTATTTTTTTACTTAGTAGAAAGTGCTTCATAATTGAAGAATTTTAAACACTAGAGTGTTTAGTGTAAAAACATTATTAACATTATAAGTCAACTTCAAGGAACGTATTAAAATAGTGTTTTTTTTTAAATGATTATCACTTTAAAAATATCAAATTAACTGACTACATAATAGACCCTGTTCACATTTCCGGGTTTCTCAGTAGAGTGTAAGTCATCTTAGTTGGTAAACTTAAGCAGGTTGCACACCAGAAGCGCCGCTCGGCAGCGCACCGCGCAGAGCCACTCAGCGCCATGCATTTTAGAATTCTAAACATAGGTTTCTATCAGGATACACACACCGGCGCCGCAAGTCGGCGGCTGTCGGTGGCGCCCGGCGACGGCTCAGGACGCAGTTCATTTTCAGCCGCGCCACAGAGCGCCATCTGATTAGTTTCATGTTAAATATCATTCGAATGTGCGCGTCTGGTGTGTGATGCTTTAAACTGTCATGTGCGCGCCGTGTCGCGGCGCCGAGTGGCGCTTCTGGTGTGCGACCTGCTTTAGAATGCAGTAAATGGGAGAGTAAAAATAAATATATTTTTACAGGCCTATTTGCTGAAATAATTAAAGAACAACTTAATGTGTCTAATCCTGGCTGATGTCTTTTCAATGATTCTAATTTCTGTATAAGTACACTAAAGAAAAGAATGTTGTTTGCTGATTTTACAGCTGCAAAGAAGGCAATCAAGCAAAATTGGTTTACTCCACAGATGTGTGCAAAAACATTTTGGATTCATAGCCTCCTTAAAATAGTGACTTGTGAAGGTACAATAGCACAAATGAATAAGGCTAAACCTAGAAACATTGATGAATGGCAATGTTTTTCTCATAAAAAGTTTTTTTCTTCTCATCTCTACTTTAAGATTGAAAATTGTTGATATGTCTGTTGCTCCCCCTCCCCTGTTTGTTTGTTTGAATGTCTTTTATTTTGGTAATCTTAAGACAATAAAACGTTAATCACAAAAAATAAAGGAAAACTCCACAATGGCGTTATCAAGACTTTCAGAAAAAAATTAAAATAGTGCCAGACTGATAACGACAACCAGAATAGAGAAAAACGTCAAATCTACTCTCCTGCTCCCATACACTCTGCATTACAAACACCTAAAACTAGAGCCCTGCATTTGGGACAGAGCCCGTCATGGCCCGACTTTTTATCCCCCTAAGGCCAATTTTCACACCATAGCTAGCATGCATATCGAGCTTCGGGCCTGCTTTAGAAAAAACTTCAAAAGAAAGTTTCATGAGATCTAATGCATGCAGTCTGGAAGCGCCAGTGATGCCTTGCACATAGAGATTTCCAGCCACGTACAATAGTGAACATAAAGAGAAAAATTGGCAATGGCTAATTTAAAACTCAAATAGTGACAACTTTGAATGAGCCAACTGATTATGCACAACTTTAAATTGAGTAAACTCACTGTGGACCACATACCGCTTGGACATCGATGTCATTTAAAACCTAAAACTTACATTTAACAAAACAAACCAAAAAAAACTCCAACTCTAAATTATTCTGATAAAATAAAACGAAAAAACATCAACCTTCTATTAAATACAAATCTGGTCTGTTTTAATGACTGTAACAGTATAAGCTGTTTGGTGGGGAAAAGACAGGCATTGGGTCAGACTCGGGCCAAAAATTCTGATAAGATATTGTGACAAGGCCAGGGCTACAGCCTGTGCGTTTCGGGCCAGGGCCAGGCTAGGGCTTAGATTTAAAGGGCACCTATGGTAAAAAATCTACTTTTCAAGCTGTTTGGACAGATCTGTGTGTTGGTATAGTGTATAGACCGTCATACTGGGGTGATATGAACACACCCAGTCCTTGTTTTTCAATTTAACTGCAAAAAAAGGGTCGGCCAATTGGAGCTGTTTTCAAATCGATCGCACCATTACGTAGGTGTGCGATTCCCCCCACCCACCGAATTGATTGACAGCTGCTCGCATTAACATGTTCCGGTAGTCGCGTGTATATGTCAACAAGACCAGACAGACATACGCAAAGCAACCGGGAATAAAAGGTCTGTTCTGTTCGCTAGGATCAGCAATCATCATCAAATGTGATTAAGAGTGAGTGTCACATGTTTAAAGTGTTTTAAAACAGAGTATGTGTGTAATTAATTACAGCGTTTTACTTCAGCTTTACTTCATCAGCACAGCCGCGTGTCAGAACAATTATAAAAGAAGACGCTTCAATCCCGGTTTGTGGAAGTTAAATCAGGTTTATTTTGTACATTAGCATAACAGATTTCCACACAGTACTTGAGGTTAGCCTTAACTAAGCTAAGCGCGCTCTGTCTGCCTGCCTGCCTGCCTGCGTGCGTGCGTGCGTGTGTATCATCTGCGGTGTGTGTGTGTGTGTGTGTGTGTGTTAACTTTGTAACCATACTGTGTGTGACTCATCAATGCAACTTCACAATACTGATTAGTAAAGGTTAGTTCTTACTGTAGTATCTCACAAACGCTACGTAAGACCGTCTTCCTTTGTCTGTCTGTTGTCTGACGCAGCTGAGGGAGGAGGCATGTAGAAATAGTGGGCGGGAAAGAATTGTCTTAAAGGCGCAGTACCACAAAACCACCCCCTGCTGGAAATCAGTATAAAACAGCATCTTGTAAAAGGTATAATGAAAAATCTGATGGGTATTTTGATCTGAAACTTTATATGCACATTCTAGAGACGCAAAAGACGTATATTAAATCTGAAAAAAGGGGTAACCTAGGTGCCCTTTAAGGCCCATGCATGACTCTACCTAAAACACATAAGCGCAAATCTGTTTTCTGTAATTTGATGCAAAGATGATATTATACACACAGAAACACTTAGAAATATACATACGTTTTTTTAAAAAGCTTTTAAGGATTTAAGATGCTGATGACGCATCATAACAGTCTTGTGAAAAGGGTCCATAAACATTTTCTACATTTTTTTCCTACACATGTAACAAATCATTCCCATGAATCCACAG
Seq C2 exon
GAAATCGAGCGATGCGAGTCCAACCACCTCATCATCCTTTTCCGTGATGGTGGATGCCAGTTCCGGGCTCTCTACATTTATTCCCCTGAAACGGAGGAGATCATCAAACTCAAAGGCACCGGGCCGCGCGCCATCAGCCGCAAGATGATCGACAGACTCTACAAATACAGCTCCGACCGCAAGCAGTTCACCGTCATCCCTGCCAAATCTGTGTCGGTCAGCGTTGACGCTCTCACCATTCACAGCCACCTGTGGCAGGCCAAACGACCCAGCACCTCTAAAAGAAAATGACCGCGCTTTCCATTGCCTCAATCCGCCGCTTTCTGATTGGCCGCTGGGTTCTATTCCAATCTAGTAAAACTGCTGATTTGCTAATGAGCGGGCCTCCTAAAAATCCTATTGGTCCACAAGCTTCTATTGGATTCCTGCTTTCCTATTGGCCTCCGCGCTGTGACATTAGGAATTATAAGTGGGCGGAGCTTGGTGTTTGATTGACAGAGTTACTGAATGTGTTTTAGGATTATGTCATGGTTCAGTGTTCAGTTTTATTGATTGATTTATTTATTTTAGGCAGAAATGTGCACTTATAAGGTTTTACAGTAGTATTAATTTACACACGAGCGAAAGACAACACCTCCACTACTTGAATTATGAATGTGCGTTCGTTATTTTTATATACACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019208:ENSDART00000137404:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=FE(30.0=100)
A:
NA
C2:
PF086836=CAMSAP_CKK=PD(68.5=90.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]