DreINT0110745 @ danRer10
Intron Retention
Gene
ENSDARG00000101131 | pbx1b
Description
pre-B-cell leukemia homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-070424-11]
Coordinates
chr6:2171784-2175165:-
Coord C1 exon
chr6:2175076-2175165
Coord A exon
chr6:2172287-2175075
Coord C2 exon
chr6:2171784-2172286
Length
2789 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGG
5' ss Score
6.17
3' ss Seq
CATGTGTTTTAATCCATCAGGCG
3' ss Score
6.43
Exon sequences
Seq C1 exon
GTGGATACCCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACGGCCTCGCAGCAAACCAGATGTACAGTCCGCAGGGCATCAAT
Seq A exon
GTAAGGCGACAAAAAAAAAAAAACACAGTTCCCCCCCCTCCCCTTCTTCTTATTTCGCCCTCCACCAATTATTTCAAAGCCATAGGGCTCAGAATGCCACTTAGCGGGACTTGTCTGGGGATCGTGGTCAGTTAGTTGATTGCCTGTGTGTTTGTGAGCGCCACGGGCGGCTGATGCCCGGCGAGACGCGGACACGAAAACGCGTCCGAACACATCACATCCAATCAGATCGGCCGGTACCTGCAGGGCCGAACAGGTGACACCGGCTGCAAATGTACCAGCCTCGCCCCCCTGCCCCACAGTCACCTGACCCTGATTACGCCCGCCAGAAAACAGACCATCTCGCTAAAAATAAAGCGTAAAGCATGCAGGAGGACGTCCCGGGGAAGCGGTGGGGGGGAGCGTCTGGCAACTCAAATTCACTGCGACAAGCCGTGTGGTAAAGGGGAAAATCAATACGACAGACACACGGGGAGACGAGTGTGGACTCGGGACAGCAATCCAAGCACATTGCTCAGATCAGGGGCACACCGCGGTAATGGCCTTGACAGAGAGAGAGACAGAGGCAGAGAGAGAGAGAGAGAAAACAAAATACTTCACTACACAACTAGAGAAATATTAAACATTTGAACTATTATTATATCTAAAAGAGACAATTATTAAAATATATATATATATATATATATATATATATATATAAATAAATATCAAATATTAAAATAATAATAAAATTATCAAATATTTTCCCCCAATTTGAAACATTAATCAATGAATTTTTTAAATTAAATGACACAGAAAAACTTTACCATGTTCTCGGGGGGGATGAATTGACGTCTAAACTGGCTGCAAAATATGTATACACCATACGCACCATACAAAATGGGGATTCTGAATGCATGTGTATTATTTGAATAATCTAGATTTTTTATTATTATTATTATTATTATTATTGTATTTGTTATAATTATCACATGTATTTTCTTTTTTGTCATTTATTTTTAGTTATTGCATATTTTATTAATTGATGTTAATACAGTTGAAGTCAGAATTATTAGCCCCCCTTTTATTTATTTATTTATTTAATCAATATTTCCCAAATGATGTTTAACAGAGCAGGGAAATGTTCACAGTATGTCTGATAATATTTTTTCTTCTGGAGAAAGTCTTACTTAATTTATTTCAGCTAGAATAAAAGCAGTTTCAAATTTTTAAAATCTATTTTAAGGACTAAATTATTAGCCTCTTTAAGCTCTTTTTTTCCTATAGTCTACAGCAGTGCTTCTCAAAGTGTGGTACCTGTACCACTAGTGGTACGCGGGCTTCCTACTAGTGGTACGTCATATTGTACATATATTAAAAAAAATGTCAAAAATGATTTATAGATTAATGTGATGACATATACCCTATATTAATGAGGTCCAAGCAACATCCCCAGATGAATAGGCTACTATATGTTAATGCGTAAGTAAGTTGGCGGTTCATTCCACTGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATTGGGCATGTTAGTAGGAATTACGGGAATTGAGTTGCAGCTGAATGGGCATCCGCTGCATAAAACATATGCTGGAGTAGTTGGCGGTTCATTCTGCTGTAGCGACCTCTGAAACAGACTAAGCCGAAGGAAAATGAATGATGAATTACAAAACACAGATCAGGTGATTGCATGAGACATCACATGATCATTCATGCTTATTCAGTGCTGTAACTAGTAGTAAAGAGTAAAAACATATGGTGTCAATACAGCAATCCGACCCATATCAGACAGTGAAAAGCAGCAGATATTGGATGAATTTAAAAGATGAGATTTTGTTTCTTATTTAAAGCACGAAACAGCATTTTTACGGATACTGAGCTGGACGTGTTATACATTCACTCATCAACTGAACCAGCGAATATTAACTGATTCGTTATATAAAAATGTCAAAAATGGGTTGATTTAAGATTGTCAATGTGGCTCATTCAGTGTAATACTGACACTATCTTTTATAAATGTGAGTGTTCAGATATTTTGCAGCCACTGTACATTTAATTTAATTTATTTACATGTATTATAGAAAGCATCACGTTTGATTGTGTGCGTTTATGGTTTTTCAGTATGCATTTGTCAACTCCTGGCATAAACAGCAGCATTTGCCGAATTTCTGCTGTTCTTTTGTTGGCTTTGATTGAAGTGCAGATCAGTGTTTGCTGTTTTCTGTCGGCATGAAATGGAGTGTAATATAGAAAGCGCCGCTCGCTCTGCTGTCTGTCAGATTAGCGAAGCTACTTTTCTTTCTCTCAATGTCCTTTATCTGTTTTGTTCTGGGGGTCTTGATTCTGTTCGCTCATTTCCTCCTATTTTGCAATGCAAATGTTGGGTTTTCATGCTTTATGGGGACTCACCGTAATGATTTTTACACCGTGCAGTACTGTATATTCTGTTCTCCTCCCACAACCCAGTCCTAACATAGAACATTCTGCATATTTACATCTTCAAAATACTTCATTCTGAGTTATTTATGAGCCATTTTTTTCATGGAGACCAAAAAACTATAACCACAAGGGCTAAAATGAACAAATGTTGATATACTTGTCCCCACAATGCGATGATTATTCCTTGCTAGCATTTGTTCAGTTGCTTAATTGTCCATAGTTTTTACATTGTTTCTTGCAATCAGAAATACTAATATGACTAATATATAACTGGTCTATCTGATATGGATTTGTCTCATGCTGTAAGTCTCACTCATATCTGTATGTCATGTGTTTTAATCCATCAG
Seq C2 exon
GCGAACGGCGGCTGGCAGGATCCCACCACCCCGTCCTCCGTCACCTCACCCACAGAAGGACCCGGCAGCGTCCACTCTGACACCTCCAACTGATCCATCACACACACACTCACACACACACACAGCGTCAGCCCTCGTCTTCATGCTACCTCTCAGATCATCCACAGGTTAGAGCAGACCGACAGACATCAGTCCAGCCTTCATCAGCACCTTCTGTTCACACATCTACCATAGTGCCAAAGTACTTCAATACATCCTTTTAGCATATAATAGACCCGAGAAAGCATTTTAAGAAGGCCTAAATTTAAGATTTGGGGTTTTGAAGTGCATATAAATAAATAATTGCACATTAAATAATGCACTTAATATGATGCATATTTGCTAGAAATAATTGCAAAGGTTTTATTTGTTAACATTAGACTTTAATTACTCTGTAAAGAATGTAATGCCAAAAATTGGTAACACTAACTACATACTAAGAACTATTTATTTAGCATTAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101131:ENSDART00000165223:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]