DreINT0131108 @ danRer10
Intron Retention
Gene
ENSDARG00000060865 | scai
Description
suppressor of cancer cell invasion [Source:ZFIN;Acc:ZDB-GENE-060526-57]
Coordinates
chr5:31443835-31446144:+
Coord C1 exon
chr5:31443835-31443935
Coord A exon
chr5:31443936-31445997
Coord C2 exon
chr5:31445998-31446144
Length
2062 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
TTTTTGTGCATGTGTTACAGGAA
3' ss Score
9.3
Exon sequences
Seq C1 exon
ATCAGGCGTATCTGCAGTTTTATGGTGATGAGTTTCTGCGTCTGCTTATGATCCGCTTCGTGTTCTGCTCCTCCGCGCTCCGGTTACACAAGCTCTTCCGG
Seq A exon
GTGAGACTCAACTCCAGGAATATTAGACCCGATCATATTAAATAACACACAATCTGATTAGTAATGATGATCAGTAAGATGATAGTCATATTTGTCTCATGAAGCTTTTATTAAATAAGGAGTTAGTTATGAATCAGATCATTTTTGAGTTTGTCCATTTATACCAGTAGTTTTCAATTCCAGTCCTCGGGGTACCCGGCCTATTTTACATGTCCTTACTTAACACACTCGTTAACAGAGAGATCCATGAACTGATCCTTGTTTGTCAAATAAAAGAGACATAAAAATGTGCAGGGTGACGGAGCCACTGATTTTGATGAGTTCATATATGTAGCACAGTTCAAATGCATAAATAAATGTATTTTCGTATATACAGTGCTCAGCATATATGAGTGCACCCCTCTCAAATCTCTCTTTTAAACTCTTATTTTTAATAGGAAGCTATACAATATTAAATTTGTGCATATACATTAGATTAATCAGTACTGAAGCCAAATCTGGAGCTTATCTAGCAAAATAACTTACGATATAGGTTAAACTAGTACACCCACATTTATATGTTGTAGAAAATATTAAATAAAAAATTAAAGAGGAAAAATCAAGAAAAGCAAAAAAAAAAATTAGTTTAAATTTTGTAGGTTGTCATTTTTTTGAATATTTAGCTGGAATTTAGTTGTATTATCTTTCAGTTTCTAAATATTTTCGGTGACTAAAATATTGATTTAATAATCATTACTGTTTAATAAATCTGTTTATTTAAATGCACCAAAATACATTGCCTACAGTATATTCACAGAGAAATCGATAAAAATCAAAATGGGGTGTACTCAATTATGCTGAGCACAGAATGAGAATATTCAGACGATGTTCAAATTGTATTTTGAAACAGACCGTTGCATAACCAAAAGGCAACAAATTTTGAAAACTAAGAATTAAAATCTTGGCTTAAGAAAATGTGCTTATCCTGAACTTAATCCAATCGACAGCCATTTGAACAACATAGGGTTGTTGTTAACTAAAACTAAAATGTTTGTCATTTTATTTATTAAATTAAAACTGTAATTTTTAAAAATATGAATATTTCTATTAGTTCATACTTGATTATTTCATAATCTAGTTTTACAATTCCTACAATTAAACTAAACAAACTAAATTAACTAATTAATTACTAAATAAAAAATGTATAAAAGAAAAACAAAAGCACTTCAAACTTCACAACATTTTAAATAAAATAAATACTAAAATGTCTAAAATATAGTCATAATAAACAAAAACTATTTAAGTTTTAAATTAATTTAATTAAATATATAAAATATCTTTTATTGATTGTCATTTTAACAAAGATGCAATAAACTCTAAATATTGGAAAACTGTACATGGAAAAGTGCTGTGGTATGTTTAGGTTAGACACTTTATTGTGTGAAGAACAGTATATGGTAATTAATAATATATTGCGATTGACACGGATTACTATATAATTTAGATTTTTGTTTAATAAAGGAACAATTTTGTCATAAATGTAACATTCCAGGGTTTTTCCAATGCATATTTCAATGAGTGCCCTATAAAGTGTTAAGAGTTGATTTTAGGAGTAGGGTTAAAGCCTACTTGTGCAATTATAAATATACTTTAACTAAAGAAACTAATTACAGATGTTCTTTTGTTAGTGAGTAAAAGGAAATTCTGAATTAACATCCTGAAATGCAGGCATACGGTGGAATCTTGCACATAAAAAAAAGTTATTGAAATAAATAAATGATTATTTTTTTAGTTTTATATTTAGAATTAATATCTAGAATTTTCTAATAATTGTGATTGTGAGTCATGTTATGCACCACCTGGTGGCGCTGTTTACACCACATTTTGACAATCACTGAAAACTTCAGCCACATTTGCAAAACTAAAGAACAAATGCAGGTCCTCTCATTGTAGAAAGTTATAAAAATATAACAATAAAGATCACTTTTTATAAGATTACATCTTTTTTGAAGCAATGTTTTATTCACAATATTGCCACCAATATCAGCTGGATGAGGATGTCGTTTTTGTGCATGTGTTACAG
Seq C2 exon
GAAGCGAGGAGTTTTCCAGAATCGTATCCCCCTCTGCCAAAACAGGAGATGGTGGAGAGCAGCCTTCTACAGAAACATGTGCTGGAGCTGGCGGCTATGCTGGACGTGCAAAACCTCTTTTCCGATGGCATGCTGGATAACTATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060865:ENSDART00000139744:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.7=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]