GgaINT0125714 @ galGal4
Intron Retention
Gene
ENSGALG00000001037 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr17:9556877-9559142:+
Coord C1 exon
chr17:9556877-9556977
Coord A exon
chr17:9556978-9558053
Coord C2 exon
chr17:9558054-9559142
Length
1076 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGC
5' ss Score
7.73
3' ss Seq
TTTTCACTGTCATCTAGCAGGAA
3' ss Score
7.22
Exon sequences
Seq C1 exon
ATCAATCATTTCTTCAGTTTTTTGGGGATGAATTTCTTCGTTTGCTTCTAACGAGATTTATCTTCTGTTCAGCTACTATGAGGATGCACAAAATTTTCCGG
Seq A exon
GTATGCAGAGATATCTGTCCCTTTGTGAGAACAAGAGTTGAGCGCATGTAGAACTGCAGGATGGAAGGGTCTAATGGCTAAACACATTTCACGTGCTAATGCCTTTAGCTTGTATTGACTCTGTGTCTTTGTACCTCTCCAAAGACATGAAGCCTTTGTCTTGCTTCATTCTTAATCTTCTATGTAAGTAACAGATACTCTGATTCACTCTAAATAGCTTTGTCTGGTAGAAAAAATTCCTTCTGATAGTGCAGAACTATTAATCTACACAGCTAAAAAGGTGTAGAACAAGAATACGAGGGAAGTAGGAAGGAGTGGAACTTCATTGCTAGAGTATATTCTAACACGGATTGGAGTTTGAAAGGTGTTTGAGGTTTAAATGAATAAACTAAGCAGGAAGGTGGTATTTTCCCTCCCTGCTGGTTAATACTGTACCAACAATGAAATCCTGCTTCTGGATCTGCACCATCCTATATTTCTGCCTGTTGGCACATCAGCTGCCTACTCTATTTTTAAGGACTACAGAAGAAAAAAAAGTAAGTCAAAACACAGGAAGTGTACAGTATTCATCTCATGTAACTACAGATATAGATATCTATAGTAGCTTTCCAAACTGAAGTTAGCTACTACTCTTCCTGGATATCAGAGAAAAATACGTCATCTGTGAGTAGGGATGGGTTAGTCCTTGGTGTCTTAGGATTTGTTTTAGGATGAGATGAATCTCCCAGTGGAGATGCTTAAATGTCTACAATTTCAAGAAATAAACTCTGGCCTATTAGGTAAGTATAGGTCAAGTGGTTGGTTGGTTTTTTTTTTTAATCATCATTTTTATTTTATTTGGCAAAGCTTTTGTGAACATATGATTTAACCATCTTAGATGAATGAGCATTTGTAGTGCCACTGAGTTAATGGAAAACTGGAAGTGGCGTCATTTCTGATAGAATCTTTTCTTTCTCTGGCAGGCTAAACAGATTGGGTTATCTCTTATGTGAAACTGGCCTTTTGCAGTCTTCTTCTGAAAAGCTGTAAAAATAAATGAATGTCTGATTCTTTTTGTTTTCACTGTCATCTAGCAG
Seq C2 exon
GAAACACGAAATTATCCAGAGTCTTATCCTCAGCTGCCAAGAGATGAAACGGTGGAGAACCCTCACCTCCAAAAGCACATTTTGGAGCTGGCTTCCATACTGGATGTTAGAAATGTTTTCCTGGAAAACACTCTTGACGACTATTAAGAAAAACTGTCTTACTGCAAAGGGGTTTCCCTGGCCACAGATTTTGAATGGTGCAGTTTTCTAATGTGAAAATCATAAAAGGAAGTACTTGATTTTATTTTTAAACTTAGGACCATTATTTTAAAAAGTAATAATAAACAGCTGTTAGGTTAGCTGTTCCATTCTGTATGGGGGGGTCAATTTTGTAAGAAGTTTTCATGTCTTTTAAATGTTAAACTAAAGAATTGCTAGAGGTTTATTTCTGGTCTTGTGGCTGTCAACCACATTTCCAACAGCTGATCCTAAGCATAGAAGTATTATTGGTTACCTTTATCCCACATTTGTGGAAATCCTTTATTTTTATACAATTTTAAGAAATTGGAAAAAATCAATAGAAAAATGATATTTTGTCCCCAAAGAGTCTGGATTTGAAATGATAAAGATGGAACCACACAGTGCAAACGGACAATAGCAATAAAACAAAGTCCTTCATAACCAATATATTTTTTCAGTCTTAGGCAAGTAAGTAGACAAAACTCTGGAAGATTAAGTTGCATTTGGAGACAGTGAGTTTGAAATGAGGTTGTAAAGAAAGTTAATGCTCCCTACAGATTTGACAAAGCAGTGTCATGTATTAACTCTGAACTGCTGGCCAAGGACACAATTTCCCCTCTGTCTGATGGGATATGTGGTTAGCAGAGTAGTGAATTAAAAACTAAGAAAGCTGGCACCCCTCTCTCACTGTAATAAGGATCATCTTGCCATTTTTGTTGCTGCCACAATTTTCTAGGAGATGGCATTCTTCATTTTGACCCACTAATCAGATATTCTTTAATTTTCGGCAGGTGTTATCCTCCTTTCTTTGTGTAGATGAAATGTATGGCTCCCACAGTGTTACCATTCCCTGACTGGAGTTGAAAGAATGCCCCATAAAGTGCTGAATACAAGCCCTTCTTATTCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001037:ENSGALT00000001535:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.6=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGCTACTATGAGGATGCACA
R:
TGGAACAGCTAACCTAACAGC
Band lengths:
343-1419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]