GgaINT0125714 @ galGal3
Intron Retention
Gene
ENSGALG00000001037 | SCAI
Description
NA
Coordinates
chr17:10277869-10279279:+
Coord C1 exon
chr17:10277869-10277969
Coord A exon
chr17:10277970-10279042
Coord C2 exon
chr17:10279043-10279279
Length
1073 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGC
5' ss Score
7.73
3' ss Seq
TTGTTTTCACTGTCATCTAGCAG
3' ss Score
5.8
Exon sequences
Seq C1 exon
ATCAATCATTTCTTCAGTTTTTTGGGGATGAATTTCTTCGTTTGCTTCTAACGAGATTTATCTTCTGTTCAGCTACTATGAGGATGCACAAAATTTTCCGG
Seq A exon
GTATGCAGAGATATCTGTCCCTTTGTGAGAACAAGAGTTGAGCGCATGTAGAACTGCAGGATGGAAGGGTCTAATGGCTAAACACATTTCACGTGCTAATGCCTTTAGCTTGTATTGACTCTGTGTCTTTGTACCTCTCCAAAGACATGAAGCCTTTGTCTTGCTTCATTCTTAATCTTCTATGTAAGTAACAGATACTCTGATTCACTCTAAATAGCTTTGTCTGGTAGAAAAAATTCCTTCTGATAGTGCAGAACTATTAATCTACACAGCTAAAAAGGTGTAGAACAAGAATACGAGGGAAGTAGGAAGGAGTGGAACTTCATTGCTAGAGTATATTCTAACACGGATTGGAGTTTGAAAGGTGTTTGAGGTTTAAATGAATAAACTAAGCAGGAAGGTGGTATTTTCCCTCCCTGCTGGTTAATACTGTACCAACAATGAAATCCTGCTTCTGGATCTGCACCATCCTATATTTCTGCCTGTTGGCACATCAGCTGCCTACTCTATTTTTAAGGACTACAGAAGAAAAAAAAGTAAGTCAAAACACAGGAAGTGTACAGTATTCATCTCATGTAACTACAGATATAGATATCTATAGTAGCTTTCCAAACTGAAGTTAGCTACTACTCTTCCTGGATATCAGAGAAAAATACGTCATCTGTGAGTAGGGATGGGTTAGTCCTTGGTGTCTTAGGATTTGTTTTAGGATGAGATGAATCTCCCAGTGGAGATGCTTAAATGTCTACAATTTCAAGAAATAAACTCTGGCCTATTAGGTAAGTATAGGTCAAGTGGTTGGTTGGTTTTTTTTTTTAATCATCATTTTTATTTTATTTGGCAAAGCTTTTGTGAACATATGATTTAACCATCTTAGATGAATGAGCATTTGTAGTGCCACTGAGTTAATGGAAAACTGGAAGTGGCGTCATTTCTGATAGAATCTTTTCTTTCTCTGGCAGGCTAAACAGATTGGGTTATCTCTTATGTGAAACTGGCCTTTTGCAGTCTTCTTCTGAAAAGCTGTAAAAATAAATGAATGTCTGATTCTTTTTGTTTTCACTGTCATCTAG
Seq C2 exon
CAGGAAACACGAAATTATCCAGAGTCTTATCCTCAGCTGCCAAGAGATGAAACGGTGGAGAACCCTCACCTCCAAAAGCACATTTTGGAGCTGGCTTCCATACTGGATGTTAGAAATGTTTTCCTGGAAAACACTCTTGACGACTATTAAGAAAAACTGTCTTACTGCAAAGGGGTTTCCCTGGCCACAGATTTTGAATGGTGCAGTTTTCTAATGTGAAAATCATAAAAGGAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001037:ENSGALT00000001535:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF120703=DUF3550=PD(1.9=81.8)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGGATGAATTTCTTCGTTTGC
R:
TTTTCACATTAGAAAACTGCACCA
Band lengths:
302-1375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]