RnoINT0131103 @ rn6
Intron Retention
Gene
ENSRNOG00000025278 | Scai
Description
suppressor of cancer cell invasion [Source:RGD Symbol;Acc:1594720]
Coordinates
chr3:23362707-23367252:-
Coord C1 exon
chr3:23367152-23367252
Coord A exon
chr3:23363052-23367151
Coord C2 exon
chr3:23362707-23363051
Length
4100 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGC
5' ss Score
7.5
3' ss Seq
TGACTTTCCTTATTTACCAGGAA
3' ss Score
9.57
Exon sequences
Seq C1 exon
ATCAGGCCTTCCTCCAGTTTTTTGGAGATGAATTTCTTCGATTGCTTCTCACAAGGTTTGTCTTCTGTTCAGCCACCATGAGGATGCATAAGGCCTTTCGG
Seq A exon
GTAGGCAGAGAACCATTAAAGACCAAATTCACCGTTTTGTTATTGAGTGTTGTTTATTATATTTTACTTACATTAAATAAAGTTTAAATAGATCCAGAATAGTATTTAGAAGCAAGCATGTGCAGCATTATGATAGCATTGTAGGTATGGGCGTACATACTTGGAATCCCAGAATGCCAGAATTCAGTAGTTCAAGGTCAGTCTGGAATTCACAGTAAAAGCATATCTCAAAAGATTGAAACAAATAGAGAAAGGTTAACATGTGACACATGTTTCCATTAGGAACATTTTCATGAGCTGCTGAATTCCTAGCACTTCAGAGGTAGAGGTTGAAGTTCAGGGTCACCCTTGGCTACCTATTCAGTTTGAGGCTAGCCTCATATATAAGGCACTGTCTTTACTTGGGAATAGGTCCTGCTAAATCTTTCCTTAAATGCAACTGATCCCCTGAGTGCTGTAATCATTTGCCTTTCCTTAAAGCCTTGTCTTTTCATTTCTGTCTAGTATGTGACTGGATTTATATTGCTTTATTTCAGTCACTGGTGTTCTGAGGGCTAGAGATGTAGCTCAGTGGTAGAATGCCCACCTAGTAGGCACAATGTCCTCAGTTCAGTCAGCACCACTAAAAAATAAAACACATATATACCTATGTATATGTATATATATGTACATGTTTGAATGGCATGTTGCTACAATGAGCCATGTTGATTAGTTTTCATTCTTTGGTATTGACTCAATTACCATTCTGCCAATAATGGATTTCTGGATTGCTTCCAGATGTTTATTTATTGTACAAATGATACAGTAATAGTTGGTGCACGCCATTAATCTTAGCACTCAGGAGGCCATCAGGAGAATCTTTATGAAGCCAACCTAGTTAGTCTACATAGTGAGCTCCAAGCCAGCCAAGGCTACATGGTGAGACCTTGTTTTAAAAAACTAAACGAATAATAAGACCAATAAGACAAAGAATAATAAATAAAATAAAATGCACACAAAACACATGAGATGTGCTTTATGTTGACCAGCTACTCTTGGGCATGGGACCTGTCCTGGAATATGATTGATAAACCTAGAGATACACCATTGTAGAAAACTCATTTTCCTTTTCCCAGAAGATAACAATTACAAATAGCTTCTTGGTTGGGGTTAGGATTTTGTCTGGTTTGTACCTGTGCTGGTCCTTCTGTATCTGTCAGTCTCTGTGAGTCCATGTGTATATCACCCCTATGTATCTAGAAAGTCTTTTCACCTCTTCTTTTGCATAGATCCCTGAGCCCTGGGTATTACAGGGCTTTCTTGGACCAGCTCTCTAATTAAGCATGAGGCTTCTTACATAGCTTAAAGCTGTTGTCCTTTAGCTGGGGCAGACTCAGCTAGCTTCTAACTTAACCTGACTCCCCCTCTATATACACTTTGTCCCTGCCACAAAGCTAGCTAGCTCTTTACCTTCCTGCTCCTTTCCATTCTCTTCCCTGTCTGCCCTCTTCATTTCCCTCCCCCTGCCCTCCATTTTCTCTCATTTTTTTCTCCTCTCCCTCTCCTCTCCCCCTTCTCCTTCCCCACCATACTTCCTGCCCCAGGTCCAGATGTCAGCTCTTTATTACACAAAACACACATTTCAGTCTTAACCACTCAACAGCAAGACATTGCCAGATCTATCTCTTAGGGTGGCCTTTAGTTTGTCAATGAGGGTTGGTGACCTTCATCTTTTGGGCAGGGAAGGAAAGACAAGCATTTACATATGAAAAACTGGGTCATGTGTCATAGAAATGGCAGTACCAAAATCCTGCCAGCATTTAACTCTCTGCCAGGACTAACAACTGAAAATGCAGGGCCCACCTTCATACAGTGTGAAGAAAGGGGGTGCAGTAATGAAGACATCTTTCAGGATTGAGTGCATCACAGTCCCATTCTCTCCACACAGTCCACTTGCAGGTCTTCATGTTATACCGTCTACTGCAATAAGTTTCTCTGATAAGATTTGGGAGAATGCACTGTATTGAGTCCTGGCCAAGTTGGTACTCAAGGTTTTTGGGTTTTAATATTATCCGTTGCATTTTTTTTTCTTTTACTTCAGTATAGAATATTAGGTTTTTTGTTCTGTTTTGTTTTTTTAATCTTTTTACAACCTGTAGTTTCAAAGTATTCTGCCACATACTTTCAACTTGTTTCTAGTTTGGCTTTGTATAATTGATACAGTCTCACCTTGTAGTCCAGGCTGGCCTTGAACTTTCTCTGCACCTGTCTCAGCCTCCTGAGTGCCAGGATTATAGGTGTGCCTCACTATTAATGCTTAACAGTGAATTGCACAAAACTGAAGTGTACCATTGGTATACATTATATTATTGTGAATGCAAACCTCTACTAAGCCATAGGACAGCATCATTCCAAAATGTTTCCTCTCTAACCCTTCTGGAGGGTCTGTGAACCACTACATCACAGATCACTACGTATGTGATAGTGCCAAATCATGAGCCTGAATCACATTGATAGACTCTTGTGTAAGCTGTTACTAAGATTAGCACATTTTTTGTTTCATATATCATTAGCTTGTCATTATTGTGTATGTGTGTGTGTGTAAAAGTGTCTTGCTTGCATATGTATATGTGTACCACATGCCCGGTACCCACAGAAGCAAGAAGATATCATCAGATCTCCTGGAACTCAAGTTTGGGTGGTTTTGAGCCTCCATGTGGGTATTGGGAACCAAACCCAGATCCCCTTGCAGAGCAACAAGTGTTCTGATCCACTAAGCTGTCCCTCCAACTCTACTTAGTTCATCTTCTTTGTGAGAGTAGTCTGTTGTTGCTGATTACCTGGCAGCTGTAATATTAGCTGCCAATGAAACTCTGCTTCAATACAAAGTAAAAGACCTCCTGTGAGTCTTTGCAGACATATTTTGAGTTTTGACTTTGAATTTTTGTTATGTTCCTCACATACAGAGAAGACTTTAAAAAATGTGCTTTTTATGCTACCTTGCCAATAGGTTCCAGCTTAGTCAGCAACTTTAATTTTTGGACTTGTGTGGCAACACAAGATCTTTTTATTTTCAGTTTCTTCAAAGACAATCATTAGGAAACTCAAGCATCGCTGCCTCCGACATCTATTTTTACTTCCTTATCCTCTCCGCTGACACGACCCAGTGTCTCCTGGCACTGGTTTGCTTTCCTTTGTTGATTGACATCCAGTGTGAGTTTACTTTGTAGACTGTGTCTTCTACTGTACTGTCCATCAGGACACTTGCCCCTTCCCACTTTTTTGAGTTTTATTAGCAGAAAGTTGTTGTGTGTTTCATTTCTAGAAACTGCCAGACTATTTTTCAAAGCAGGTCATTAACACTTTATACCTTGGCAAGGTATGAAGATACTTGTATGCAGGCTGCCTGGGTGCCATCAGACCTACAATCTCATCCCATCCAGGCGGGTGGGACCCAACCTGCCTTCACTCATCAGGATTGGTGGCGAATATCTTTCCATTTAACAATAAAGTTTTTGAAGACTAAACATTTTTAAATGCCAAGGAAATTCAACTAATTAGGTTTTCTTTTGCCGTTGGTTTGTTTTCTTCAGGTACCTAAGAAATCTTTTCTAATATTACAAAAGTTTTTTTCTCTTTTCTTCTTTAGATTTTGTATACTCATCTTGGTTTCTACCTCAGCTTTTTTCATTCATACAATGAGTTTTGGGGTTTTTTTGTTTAGTTCTATGTGTGGATCTTGCTGAAGATTTGTATGAGTTTTGATAGTATAGAATATAGAGCCTAACAGCCATAGATAGAGGCTAGCAAGTATTTGTGAAATAATTCAGAATGCTAATATAGTAAGCTAGCCCATTTGAAGCTATATTGAGAGGTCATGTGTCACTTGATAGCCAGAGGTGGTTGTGCTCTCGGGAGGCTGACAAAGGAACATGACCACATGTTTGAGGGATAACAAGATCCTGTCTAAAAGTCAGATGTTACCAAACTATCAAAAAACAGATATACTAGTAATAATAACTGGTAAGAGAAGAAAATAAACATTTAACTGCTCCTTAATATTGTTAAGCAAGTAATTTCCTCCCAGCAGACTATGACACATGACTTTCCTTATTTACCAG
Seq C2 exon
GAAACTCGAAATTACCCAGAATCCTATCCACAACTGCCAAGGGATGAAACTGTGGAGAATCCTCACCTTCAGAAGCACATTTTGGAATTGGCCTCCATTCTGGATGTTCGAAACATCTTCTTTGAGAATTCTATGGATGACTATTAAACCCTCCTGTTTAACAGTTTTTCATTTTCCACAGATTTTAAATGGTGCAGTTTTTTAATGTAATGACAGAGACATAGTGTGTTACTTGGTTTTTATTTTTGGATTTAGGAACCACCATTTTAAAAGCAAACTGAAAAAAAAGTTCAAACTTTTAGGGTAACTTTTAAAATATAATCTTTCAAGTCTTTTAAAGTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025278:ENSRNOT00000039410:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.7=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]