GgaEX0004825 @ galGal3
Exon Skipping
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5631054-5633801:+
Coord C1 exon
chr23:5631054-5631143
Coord A exon
chr23:5631940-5632044
Coord C2 exon
chr23:5633724-5633801
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTCCATCGGTACCTGTTAGCAA
3' ss Score
0.31
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
GTGCGTAAGCACATCAATGACCTCTATGAGGACCTGCGGGACGGCCACAACCTCGTCTCGCTGCTGGAGGTGCTGTCGGGCGTGAAGCTG
Seq A exon
CAAATAGAGCCGCCAGCTCAGAGGAGCCTCCGCCTGGTGAAAGCGCCGGCCTGGTGCCGTGCCAGCAGCGAGGAGCGGGAGGAGGAGGAAGATGATGATGAAGAA
Seq C2 exon
CCCCGCGAGAAGGGCCGGATGCGATTCCACAGACTGCAGAACGTGCAGATCGCACTGGATTTCCTGAAGCAGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'3-4,'3-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.371 C2=0.038
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
PF0030726=CH=FE(25.0=100)
C2:
PF0030726=CH=FE(24.8=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAAGCACATCAATGACCTCT
R:
CCGCTGCTTCAGGAAATCCAG
Band lengths:
162-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]