MmuEX0027446 @ mm9
Exon Skipping
Gene
ENSMUSG00000028649 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:MGI Symbol;Acc:MGI:108559]
Coordinates
chr4:123217039-123222074:-
Coord C1 exon
chr4:123221985-123222074
Coord A exon
chr4:123219735-123219830
Coord C2 exon
chr4:123217039-123217116
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTTGGTTGGTGGCCAAAGGAG
3' ss Score
0.61
5' ss Seq
GTAGTAGGT
5' ss Score
2.71
Exon sequences
Seq C1 exon
GTCCGCAAGCACATCAATGATCTCTATGAAGACCTTCGGGATGGACACAACCTGATCTCCCTGTTAGAGGTCCTCTCAGGCATCAAACTG
Seq A exon
GAGCCAGCAGGGCTGAAGACCCTTCGTCTCGTGAGCATGCCCTCCTGGCGTCATGCAAACAGCGAGGATCAGGAAGAGGAAGATGATGATGATGTA
Seq C2 exon
CCCAGAGAGAAGGGCAGGATGCGTTTCCACAGGCTGCAGAATGTGCAGATCGCCCTGGACTTCCTAAAGCAGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028649-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.438 C2=0.015
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(33.3=96.7)
A:
PF0030726=CH=FE(23.3=100)
C2:
PF0030726=CH=FE(24.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCAAGCACATCAATGATCT
R:
CTGCCGCTGCTTTAGGAAGTC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: