RnoEX0051765 @ rn6
Exon Skipping
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141219079-141223367:-
Coord C1 exon
chr5:141223278-141223367
Coord A exon
chr5:141221242-141221337
Coord C2 exon
chr5:141219079-141219156
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTTTGGTTGATGGCCAAAGGAG
3' ss Score
0.13
5' ss Seq
GTAGTAGGT
5' ss Score
2.71
Exon sequences
Seq C1 exon
GTCCGCAAGCACATCAATGATCTCTATGAAGACCTTCGGGATGGACACAACCTGATCTCTCTGTTAGAGGTCCTCTCGGGCATCAAACTG
Seq A exon
GAGCCAGCAGGGCTGAAGACCCTTCGTCTCGTGAGCATGCCCTCCTGGCGCCATACAAACAGCGAGGATCAGGAAGAGGAAGATGATGATGATGTA
Seq C2 exon
CCCAGAGAAAAGGGCAGGATGCGTTTTCACAGGCTGCAGAATGTGCAGATTGCCCTGGACTTCCTAAAGCAGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047_CASSETTE11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.531 C2=0.013
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
PF0030726=CH=FE(23.3=100)
C2:
PF0030726=CH=FE(24.8=100)
Main Inclusion Isoform:
ENSRNOT00000084109fB8242
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCAAGCACATCAATGATCT
R:
CTGCCGCTGCTTTAGGAAGTC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]