GgaEX0005708 @ galGal3
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
NA
Coordinates
chr6:12135556-12137106:+
Coord C1 exon
chr6:12135556-12135597
Coord A exon
chr6:12136100-12136126
Coord C2 exon
chr6:12137026-12137106
Length
27 bp
Sequences
Splice sites
3' ss Seq
TCATATCTCGTTTCATACAGGGT
3' ss Score
8.01
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATGTCTGGTCCCCCTGGACCTCAAGGCCCACCAGGACCTCCA
Seq A exon
GGTCTTCAGGGCCTCCCAGGACCGAAG
Seq C2 exon
GGGGAAGCAGGGATTGATGGAATGAAAGGAGAGAAGGGTGTCCAGGGTGAAAAAGGAGACAGAGGACCACTGGGATTACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286-'33-34,'33-33,34-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(15.5=100),PF0139113=Collagen=FE(18.6=100)
A:
PF0139113=Collagen=PD(6.9=22.2),PF0139113=Collagen=FE(43.3=100),PF0139113=Collagen=PU(28.4=85.2)
C2:
PF0139113=Collagen=PD(6.0=18.5),PF0139113=Collagen=FE(37.1=100),PF0139113=Collagen=PU(27.7=85.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGGACCTCAAGGCC
R:
GGTAATCCCAGTGGTCCTCTGT
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]