RnoEX0022833 @ rn6
Exon Skipping
Gene
ENSRNOG00000000552 | Col13a1
Description
collagen type XIII alpha 1 chain [Source:RGD Symbol;Acc:1595704]
Coordinates
chr20:31473372-31474665:-
Coord C1 exon
chr20:31474624-31474665
Coord A exon
chr20:31473819-31473845
Coord C2 exon
chr20:31473372-31473452
Length
27 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGATCCCAAACACAGGGC
3' ss Score
5.84
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGCCTGGGCCGCCAGGGCCAGAGGGTCCTCCAGGACCGCCG
Seq A exon
GGCCTCCAAGGTATTCCAGGACCAAAG
Seq C2 exon
GGAGAAGCAGGCCTAGATGGCAGTAAAGGAGAGAAGGGCTCCCAGGGAGAAAAAGGAGACCGGGGGCCTCTGGGATTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000552-'35-39,'35-38,36-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.5=100),PF0139113=Collagen=PU(17.5=78.6)
A:
PF0139113=Collagen=FE(10.1=100),PF0139113=Collagen=FE(12.7=100)
C2:
PF0139113=Collagen=PD(1.3=3.7),PF0139113=Collagen=FE(41.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAGGGTCCTCCAGG
R:
AGGCAATCCCAGAGGCCC
Band lengths:
106-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]