MmuEX0012143 @ mm9
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61316105-61320377:-
Coord C1 exon
chr10:61320336-61320377
Coord A exon
chr10:61319530-61319556
Coord C2 exon
chr10:61316105-61316140
Length
27 bp
Sequences
Splice sites
3' ss Seq
GTTCTGACCCCCCAACACAGGGC
3' ss Score
5.25
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTTCCTGGGCCGCCAGGGCCAGAGGGTCCTCCAGGACCTCCG
Seq A exon
GGCCTCCAAGGTTTTCCTGGACCAAAG
Seq C2 exon
GGAGCTTCAGGTTTGGACGGCAGGCCTGGGCCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806_MULTIEX1-4/6=3-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.9=100),PF0139113=Collagen=PU(18.3=92.9)
A:
PF0139113=Collagen=PD(3.9=33.3),PF0139113=Collagen=FE(11.3=100)
C2:
PF0139113=Collagen=PD(13.3=66.7),PF0139113=Collagen=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: