GgaEX0005709 @ galGal3
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
NA
Coordinates
chr6:12137026-12140022:+
Coord C1 exon
chr6:12137026-12137106
Coord A exon
chr6:12138928-12138963
Coord C2 exon
chr6:12139969-12140022
Length
36 bp
Sequences
Splice sites
3' ss Seq
ACCTTCCCCCATCTGTTCAGGGT
3' ss Score
8.81
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGGGAAGCAGGGATTGATGGAATGAAAGGAGAGAAGGGTGTCCAGGGTGAAAAAGGAGACAGAGGACCACTGGGATTACCC
Seq A exon
GGTGCTTCAGGTTTAGACGGCAGGCCTGGACCACCG
Seq C2 exon
GGTACTCCAGGACCAATTGGGGTTTCGGGACCAGCAGGACCAAAAGGAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(6.0=18.5),PF0139113=Collagen=FE(37.1=100),PF0139113=Collagen=PU(27.7=85.2)
A:
PF0139113=Collagen=FE(20.5=100),PF0139113=Collagen=PU(24.3=94.4)
C2:
PF0139113=Collagen=PD(8.6=33.3),PF0139113=Collagen=FE(20.5=100),PF0139113=Collagen=PU(2.9=11.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAAGCAGGGATTGATGGA
R:
GTCCCGAAACCCCAATTGGTC
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]