MmuEX0012145 @ mm10
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61851112-61856418:-
Coord C1 exon
chr10:61856338-61856418
Coord A exon
chr10:61853357-61853392
Coord C2 exon
chr10:61851112-61851165
Length
36 bp
Sequences
Splice sites
3' ss Seq
AAACTGTGCCCTTCGTCCAGGGA
3' ss Score
6.14
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGAGAAGCAGGCCTAGAGGGCAGTAAAGGAGAGAAGGGCTCCCAGGGAGAAAAAGGAGACCGGGGGCCTCTGGGATTGCCT
Seq A exon
GGAGCTTCAGGTTTGGACGGCAGGCCTGGGCCACCG
Seq C2 exon
GGTACTCCAGGACCAATCGGGGTTCCAGGCCCAGCCGGACCAAAGGGCGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(10.1=32.1),PF0139113=Collagen=FE(42.2=100),PF0139113=Collagen=PU(27.4=82.1)
A:
PF0139113=Collagen=PD(13.3=66.7),PF0139113=Collagen=FE(13.8=100)
C2:
PF0139113=Collagen=PD(3.1=10.5),PF0139113=Collagen=FE(21.4=100),PF0139113=Collagen=PU(2.9=10.5)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTAAAGGAGAGAAGGGC
R:
CTTTCGCCCTTTGGTCCGG
Band lengths:
116-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types