BtaEX0009575 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011741 | COL13A1
Description
Bos taurus collagen, type XIII, alpha 1 (COL13A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105433]
Coordinates
chr28:26384714-26390911:+
Coord C1 exon
chr28:26384714-26384794
Coord A exon
chr28:26388711-26388746
Coord C2 exon
chr28:26390858-26390911
Length
36 bp
Sequences
Splice sites
3' ss Seq
AAACTGTTCCCTTTGTCCAGGGA
3' ss Score
6.97
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGGGAAGCAGGACTAGACGGAGCAAAAGGAGACAAGGGCGTCCAGGGAGAAAAAGGAGACCGAGGTCCTCTGGGATTACCC
Seq A exon
GGAGCTTCAGGTTTGGACGGCAGGCCTGGGCCACCG
Seq C2 exon
GGTACTCCAGGACCAATCGGAGTTCCAGGCCCAGCGGGACCAAAGGGAGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011741_MULTIEX4-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(9.0=29.6)
A:
NO
C2:
PF0139113=Collagen=PU(2.9=11.1)
Main Inclusion Isoform:
ENSBTAT00000039811fB1833
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCAAAAGGAGACAAGGG
R:
CCTCTCTCCCTTTGGTCCCG
Band lengths:
118-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development