GgaEX0005939 @ galGal3
Exon Skipping
Gene
ENSGALG00000004424 | SEC16B
Description
NA
Coordinates
chr8:6928877-6930883:+
Coord C1 exon
chr8:6928877-6928938
Coord A exon
chr8:6930020-6930155
Coord C2 exon
chr8:6930659-6930883
Length
136 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTTTGCTGCCGTAGGGA
3' ss Score
9.32
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GTAATCCTTCAAGGCACAACAGATCAGGAGGAGCTTCAGGCCTTCCCAGGGCCTCTGGCCAG
Seq A exon
GGAAGATCTGCACAAAGTAGATGTGATGACATTTTGCCAGCAAAAGATAGCCTCAAGCTGTGATCTCTCAACACAGAGAGGCAGAGATTCAGCTCTTCTCTGGAAACTCCTGGTCCTCCTGTGCCGACAGAATGGG
Seq C2 exon
TCCATGGTGGGCTCGGACGTGGCGGAGCTGCTGATGCAGGACTGCAGGCAGCAGGAGAGGTACAAGAGGCAGGAGCCGGCGGTGGGCCCCGTCAGCCTGGCAGATGAGGAGTGGCGTCAACTGGGGACACTGGACCTCATCACAGGGGAAGTCCCTCCTGTGGTAGAGACACAGGCACAGATAGTGGAGAAGTTCACCAAGCTCCTCTACTATGGCAGGAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004424-'8-10,'8-8,9-10
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.238 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF129322=Sec16=FE(19.6=100)
A:
PF129322=Sec16=FE(44.1=100)
C2:
PF129322=Sec16=PD(0.1=0.0),PF129312=Sec16_C=PU(4.6=14.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAACAGATCAGGAGGAGC
R:
GGAGCTTGGTGAACTTCTCCA
Band lengths:
254-390
Functional annotations
There are 0 annotated functions for this event