BtaEX0031729 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000854 | SEC16B
Description
SEC16 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr16:60779628-60782785:-
Coord C1 exon
chr16:60782724-60782785
Coord A exon
chr16:60780615-60780750
Coord C2 exon
chr16:60779628-60779858
Length
136 bp
Sequences
Splice sites
3' ss Seq
TCCTTGAAATCTCTCCCTAGGGA
3' ss Score
9.9
5' ss Seq
GGGGTCAGT
5' ss Score
3.99
Exon sequences
Seq C1 exon
GTTATTCTGAATGATTCTGAGGAACAAGAAGAGATGAGGACTTTCTCAGGACCACTGATCAG
Seq A exon
GGAAGATGTGCACAAGGTGGACATCATGACGTTTTGCCAGCAGAAAGCAGCACAGAGCCACAAATCTGAGACACCGGGGAGCAGAGACTCGGCTCTACTCTGGCAGCTGTTGGTTCTCCTTTGTCGGCAGAATGGG
Seq C2 exon
TCCATGGTGGGGTCTGACATCGCCGAGCTGCTGATGCAGGACTGCAAGAAGCTGGAGAAGTACAAGCGGCAGCCGCCTGTCGCCAATCTCATCAACCTGACGGATGAGGACTGGCCAGTGCTGAGCTCTGGGACCCGGGACCTGCTCACCGGGGAGATTCCTCCCAGCGTGGAGACGCCTGCGCAGATCGTGGAGAAATTCACTAAGCTGCTCTACTATGGAAGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000854-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=0.196 C2=0.013
Domain overlap (PFAM):
C1:
PF129322=Sec16=FE(19.6=100)
A:
PF129322=Sec16=FE(44.1=100)
C2:
PF129322=Sec16=PD(0.1=0.0),PF129312=Sec16_C=PU(4.5=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAACAAGAAGAGATGAGGACT
R:
ATTTCTCCACGATCTGCGCAG
Band lengths:
244-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development