DreEX6021762 @ danRer10
Exon Skipping
Gene
ENSDARG00000099554 | sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050208-274]
Coordinates
chr6:23819046-23820746:-
Coord C1 exon
chr6:23820685-23820746
Coord A exon
chr6:23819465-23819603
Coord C2 exon
chr6:23819046-23819288
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTCTTTTGTATAGGGA
3' ss Score
9.7
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
GTAATTCTCTGTGACACACATGCACAACACGATATGAGAGACTTTCCTGGACCTCTGGCAAG
Seq A exon
GGAGGATTTGCATAAAGTGGATGCCATTAACTTTGCCATTCAAATGTCAGAGATGTGTCTAAAGGATGAGAAATTAGAAGACCACACATCTGCTGCCCTCTTGTGGCATTTCCTAATACTGCTGTGCAGACAGAATGGA
Seq C2 exon
AGAATTCTGGGTTCAGATGTTGCAGAACTGCTAATGAGGGAGTCCAGTTCTCTGGGGGTGTGGGGGGACACTGCTGAACCTGCAGATGGAAAAAGTCTCATTGATCTGAGTGAAACACCTACAGTAGAAAAAGAGACCCTCAACTTTTCTGACCTCCTTACTGGATTTCCACCAACTGACAAAGAGGCTGAAGAGCAAAACCTTCAAAAATACACCAAACTATTGCTGTCTGGGAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099554-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.127
Domain overlap (PFAM):
C1:
PF129322=Sec16=FE(19.4=100)
A:
PF129322=Sec16=FE(44.7=100)
C2:
PF129322=Sec16=PD(0.1=0.0),PF129312=Sec16_C=PU(20.0=13.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACACATGCACAACACGA
R:
TCAGCCTCTTTGTCAGTTGGTG
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]